Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324C08f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0237 - 1808203-1809159,1809246-1809399,1809488-1809636,180... 82 3e-16
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 75 3e-14
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 29 2.3
02_01_0206 + 1388149-1388330,1388527-1388629,1388896-1388964,138... 29 2.3
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 29 3.0
07_03_0043 - 12741661-12741816,12741980-12742153,12742870-127429... 28 4.0
02_02_0597 - 11996350-11996483,11997511-11997604,11997877-119980... 28 4.0
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 28 4.0
11_06_0174 - 20907202-20907258,20907875-20908024,20908293-209084... 28 5.2
04_04_1079 - 30663919-30665044,30665143-30665298,30665405-306655... 28 5.2
11_01_0752 - 6327269-6327764,6328571-6328839 27 6.9
02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824 27 6.9
06_01_0940 + 7235801-7236916 27 9.1
>06_01_0237 -
1808203-1809159,1809246-1809399,1809488-1809636,
1809715-1809997,1810087-1810192,1810293-1810383,
1810779-1811270
Length = 743
Score = 81.8 bits (193), Expect = 3e-16
Identities = 59/169 (34%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Frame = +2
Query: 2 LRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPI 181
L ID++ N+ G P CA M I L+ MRY P + DRFILS GH +
Sbjct: 94 LAIDAVEKANSGHPGLPMGCAPMGHI---LYDEVMRYNPKNPYWFNRDRFILSAGHGCML 150
Query: 182 LYAAWAEAGLFPL--DELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAVAAGMAYV 352
YA AG + ++LK R+ S GHP V+V TG LGQG+A A G+A
Sbjct: 151 QYALLHLAGYDAVLEEDLKQFRQWGSKTPGHPENFETPGVEVTTGPLGQGIANAVGLALA 210
Query: 353 GKYF---------DQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLDNL 472
K+ + + YC++GDG EG E+ A H+ L L
Sbjct: 211 EKHLAARFNKPDSEIVDHYTYCILGDGCQMEGISNEACSLAGHWGLGKL 259
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 75.4 bits (177), Expect = 3e-14
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Frame = +2
Query: 2 LRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPI 181
+R ++ + +KSGHP A + VLF +R+ P DRFILS GH +
Sbjct: 62 IRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFILSAGHGCML 121
Query: 182 LYAAWAEAGL--FPLDELKNLRKLDSDLEGHPTP-RLNFVDVGTGSLGQGLAVAAGMAYV 352
YA AG +D+LK R+ S GHP V+V TG LGQG A A G+A
Sbjct: 122 QYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGFANAVGLALA 181
Query: 353 GKY----FDQAPYRV-----YCLVGDGEAAEGSIWESLHFASHYKLDNL 472
K+ F++ ++ Y ++GDG EG E+ A H+ L L
Sbjct: 182 EKHLAARFNKPDLKIVDHHTYVILGDGCQMEGVSNEASSLAGHWGLGKL 230
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 264 ATPPRDSTSWTSAPAPW 314
A PPR SW +PAPW
Sbjct: 261 AFPPRRPNSWAPSPAPW 277
>02_01_0206 +
1388149-1388330,1388527-1388629,1388896-1388964,
1389684-1389803,1390352-1390482,1390840-1390881,
1390961-1391138,1391241-1391319,1391441-1391610,
1392503-1392629,1392731-1392846,1392926-1393033,
1393118-1393180,1393283-1393456,1393814-1393978
Length = 608
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 150 NLSAEASRGA---EILYRIVWKKRTDIISAIDAHDVG*PDFEAFVATILSI 7
++S E R A ++ +R+ + +II AID++ G DFE FVA L I
Sbjct: 467 SISIEEMRHALAKDLPWRLKGPRVLEIIQAIDSNTDGLVDFEEFVAATLHI 517
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Frame = +2
Query: 299 GTGSLGQGLAVAAGMAYVGKYFDQAPYR--------VYCLVGDGEAAEGSIWESLHFASH 454
G +G+G+ VA G A+ KY + + GDG G +E L+ A
Sbjct: 182 GFAFIGEGIPVATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQL 241
Query: 455 YKL 463
+KL
Sbjct: 242 WKL 244
>07_03_0043 -
12741661-12741816,12741980-12742153,12742870-12742932,
12744107-12744214,12744303-12744418,12745188-12745314,
12746423-12746592,12747409-12747487,12747558-12747669,
12748064-12748154,12748425-12748534,12748536-12748666,
12749557-12749817
Length = 565
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 120 EILYRIVWKKRTDIISAIDAHDVG*PDFEAFVATILSI 7
++ +R+ + +I+ AID++ G DFE FVA L +
Sbjct: 440 DVPWRLKGPRVLEIVEAIDSNTDGLVDFEEFVAATLHV 477
>02_02_0597 -
11996350-11996483,11997511-11997604,11997877-11998032,
11998580-11998639,11998733-11998951,11999038-11999377,
12001240-12001571
Length = 444
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 50 PTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 205
PT +MA + +RYKISA D R +L H P ++ + A
Sbjct: 30 PTRGGAMAAAGDKMSIRAVRYKISASVDDRGPRPVLPLAHGDPSVFPEFRTA 81
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -1
Query: 149 ICRRKRLVARRSCTALCGRREQTLSPPLTRMMSDDQTLR 33
+ R +R VAR++ ALC RR+++L +T++ D LR
Sbjct: 650 LARLQRGVARKALRALCTRRKKSLD-RITKLEKDRDYLR 687
>11_06_0174 -
20907202-20907258,20907875-20908024,20908293-20908414,
20908748-20908901,20909040-20909249
Length = 230
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +2
Query: 224 ELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAAGMAYVGKY 361
EL N D L HP PRLN V G G+G V A VG +
Sbjct: 38 ELLNFMTYDR-LACHPGPRLNLV-AGPNGSGKGSLVLGRAASVGAF 81
>04_04_1079 -
30663919-30665044,30665143-30665298,30665405-30665563,
30665640-30665770,30666230-30666315,30666607-30666673,
30666944-30667023,30667173-30667260,30667380-30667428,
30667516-30667608,30667725-30667808,30667986-30668044,
30668293-30668327,30668416-30668718,30669111-30669275,
30669701-30669780,30670932-30671003,30671143-30671234,
30671359-30671433,30671552-30671688,30671763-30671890,
30671942-30672033,30672473-30672808
Length = 1230
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 157 KNKSVGGSVSWR-GDLVPHCVEEENRHYLRH 68
KN GGS S D V HC+ E + + RH
Sbjct: 653 KNVKNGGSFSMNLNDSVTHCIAAEKKDFARH 683
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 346 GHAGRHGEPLAQGAGADVHEVESR 275
G AGRH E G G D V SR
Sbjct: 165 GRAGRHAEAAGGGGGGDAASVASR 188
>02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824
Length = 649
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 457 VVAGEVQRLPDAALGRLSVAHQAIHPVGRLVEVLPDVGHAGRHGE 323
+V G+ L DA G ++ +H GRL+E + V HGE
Sbjct: 520 IVTGKKAMLNDAQFGHITDWVWHLHQRGRLLEAVDGVLGTAGHGE 564
>06_01_0940 + 7235801-7236916
Length = 371
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 101 TMRYKISAPRDASADRFILSKGHAAPILYAAWAEA 205
T+RY I+A S DR LSK A+ +A W+ A
Sbjct: 166 TLRYAITATSQTSIDRATLSKVFAS--AFARWSAA 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,384,647
Number of Sequences: 37544
Number of extensions: 301585
Number of successful extensions: 1199
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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