Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...   243   7e-65
U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical pr...    31   0.50 
AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    30   0.87 
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical ...    27   8.1  
AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score =  243 bits (594), Expect = 7e-65
 Identities = 111/157 (70%), Positives = 130/157 (82%)
 Frame = +2

Query: 2   LRIDSIVATNASKSGHPTSCASMAEIMSVLFFHTMRYKISAPRDASADRFILSKGHAAPI 181
           +RI SI  T ASKSGHPTS  S AEIMS LFF  M+Y ++ P+ ASADRF+LSKGHA PI
Sbjct: 18  MRISSIEMTCASKSGHPTSSTSAAEIMSTLFFSEMKYDVAEPKSASADRFVLSKGHACPI 77

Query: 182 LYAAWAEAGLFPLDELKNLRKLDSDLEGHPTPRLNFVDVGTGSLGQGLAVAAGMAYVGKY 361
           LYAAW EAGL   +++ +LRK+DSD+EGHPTPRLNF+DV TGSLGQGL VA GMAYVGKY
Sbjct: 78  LYAAWEEAGLLSHEQVLSLRKIDSDIEGHPTPRLNFIDVATGSLGQGLGVATGMAYVGKY 137

Query: 362 FDQAPYRVYCLVGDGEAAEGSIWESLHFASHYKLDNL 472
            D+A YRV+CL+GDGE+AEGS+WE+  FAS YKLDNL
Sbjct: 138 IDKASYRVFCLLGDGESAEGSVWEAAAFASIYKLDNL 174


>U12965-7|AAY86205.1|  528|Caenorhabditis elegans Hypothetical
           protein F23F12.13 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 257 LEGHPTPRLNFVDVGTGSL--GQGLAVAAGMAYVGKYFDQAPYRVYCLVG 400
           +E  PT ++  + +GT SL    G  +A  MAY+   +  APY V C +G
Sbjct: 416 VECFPT-KIRTIGIGTCSLLARTGALLAPQMAYLSDIYRPAPYAVVCSIG 464


>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +3

Query: 219 WTS*RTCASWTRTWRATPPRDSTSWTSAPA---PWARGSPWRPAW 344
           W S  T  S   +W A P   STSW +APA    W       P W
Sbjct: 334 WQSENTAPS--TSWGAAPAAPSTSWGAAPAAPPTWGGAPTAAPTW 376


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 269 PTPRLNFVDVGTGSLGQ--GLAVAAGMAYVGKYFDQAPYRVYCLVG 400
           PT R+  + +GT SL    G  +A  MAY+ + +   PY + C +G
Sbjct: 432 PT-RIRTIGIGTCSLLARIGALLAPQMAYLSEIYPPIPYIIVCSIG 476


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 389  CLVGDGEAAEG--SIWESLHFASHYKLDNLXRHLR 487
            CL    E  +G  S+WE L    HYKL  L +H++
Sbjct: 3755 CLKKCDEYLQGDVSLWEILFNTDHYKLLQLTKHMQ 3789


>AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3b protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +2

Query: 272 TPRLNFVDVGTGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFAS 451
           T   NFV + +    Q L  A G AY  K             GDG A+EG    + +FA+
Sbjct: 181 TKERNFVTISSPLTTQ-LPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAA 239

Query: 452 HYK 460
             K
Sbjct: 240 TLK 242


>AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3a protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +2

Query: 272 TPRLNFVDVGTGSLGQGLAVAAGMAYVGKYFDQAPYRVYCLVGDGEAAEGSIWESLHFAS 451
           T   NFV + +    Q L  A G AY  K             GDG A+EG    + +FA+
Sbjct: 180 TKERNFVTISSPLTTQ-LPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAA 238

Query: 452 HYK 460
             K
Sbjct: 239 TLK 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,601
Number of Sequences: 27780
Number of extensions: 203558
Number of successful extensions: 623
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)