Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   0.32 
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    27   2.2  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    27   2.2  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    27   2.2  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    27   2.2  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   5.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.0  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   9.0  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    25   9.0  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   9.0  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 1    KHLLLYFHQKVKFKIKYLNIVRHAKREIVATLTLQTFKTRGLPHSRH 141
            K LLL  +  VKF IKY   ++  K E V  + ++ FK R + +  H
Sbjct: 1488 KELLLEAY--VKFLIKYPEFIKSQKMEEVHQVIVREFKRRNIVYKSH 1532


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 338 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 255
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 338 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 255
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 338 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 255
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 338 IQICNYY*-RLSLKCLYCNVLIFFF-HIIF 255
           ++IC+Y     +L CL+ N ++FFF H I+
Sbjct: 40  LRICSYIMFGFALVCLFTNTIVFFFKHTIY 69


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 217 LYVHISELHIIIIKVTRFSSVFVLYCDGN 131
           +Y+   ELH+ ++ +    +  V  CDGN
Sbjct: 196 IYLKAKELHLPLVHIFNVENEIVENCDGN 224


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 235 IVIFCKLYVHISE 197
           ++IFCKL++H +E
Sbjct: 347 VLIFCKLFIHYNE 359


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +2

Query: 311 SVNNNYKSEYVTDVLEVAGRGTAGRLYISTHFIH 412
           ++ N +  + + D ++V  +GT   LY+   F++
Sbjct: 603 NIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVN 636


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +3

Query: 132 FPSQYNTKTELKRVTLIII 188
           FP+ Y+TK ++K+V + ++
Sbjct: 29  FPASYDTKVDMKKVNIEVL 47


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 107 VCNVSVATISRFACRTMFKYF 45
           VC+VS+  +S +AC    +YF
Sbjct: 76  VCSVSLTNLSVYACLVCGRYF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,635
Number of Sequences: 5004
Number of extensions: 29054
Number of successful extensions: 64
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)