Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C03f
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s...    61   9e-11
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    28   0.62 
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz...    27   1.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   1.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.6  

>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
           subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 60.9 bits (141), Expect = 9e-11
 Identities = 30/88 (34%), Positives = 48/88 (54%)
 Frame = +2

Query: 197 SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDI 376
           S +  G  +  LK +L+  P G+  Q+V+   L   + VL  I++A I   V   S ++I
Sbjct: 45  SAIQTGNALQGLKTLLSYVPYGNDVQEVRTQYLNAFVDVLSNIRAADIPAFVKECSTEEI 104

Query: 377 DNLMKYIYKGFEFPSEGSSGHLLXWHDK 460
           DN++ +IY+G   P   +S  LL WH+K
Sbjct: 105 DNIVNFIYRGLANPQAYNSSVLLNWHEK 132


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 117 INTMKTTSKKTKQN-KPALLDQMKAKCVRC*IKADILMHSS*C*IMLHLDHLI 272
           + T+ TT ++   +  P LLD++  K     ++AD+LM    C ++ H  HL+
Sbjct: 486 VETIDTTIRRLDPSLAPILLDKLAEKLALRPMRADVLMVWIRCTLITHGGHLV 538


>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 293 LTLTLKVLLAIKSAQIEEAVGSLSLDDIDNLMKYIYKGFEFP 418
           LTL   V   +  ++  +  G L++ D  N++KY Y+   FP
Sbjct: 50  LTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFP 91


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +2

Query: 338 IEEAVGSLSLDDIDNLMKYIYKGFE 412
           + + +G L +DD+++L+ Y+Y   E
Sbjct: 756 VGQTLGELGVDDVNDLISYVYHDVE 780


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 194 CSLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSL 367
           CS+  +   I  ++ +L N+P  + N Q K++  T     L AI+S   E +  SLSL
Sbjct: 322 CSIYGREHEIKLIRKILRNSP-RAINHQDKKDLETFNPYYLNAIES---ESSSQSLSL 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,932
Number of Sequences: 5004
Number of extensions: 28871
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)