Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324C03f
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0084 + 19899972-19900075,19900187-19900259,19900343-199004... 44 8e-05
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473... 33 0.15
09_02_0481 - 9772783-9773985 29 2.5
08_01_0430 + 3774769-3774966,3776951-3777142 28 4.3
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 28 4.3
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864... 27 5.7
09_02_0477 - 9737851-9739356 27 7.5
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 27 7.5
06_03_1073 - 27373259-27373304,27373542-27373624,27373719-273743... 27 7.5
04_04_0207 + 23602065-23604315,23604611-23605116 27 7.5
11_06_0361 - 22711200-22712180,22712523-22712729,22715205-227159... 27 10.0
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 27 10.0
>11_06_0084 +
19899972-19900075,19900187-19900259,19900343-19900443,
19901502-19901637
Length = 137
Score = 43.6 bits (98), Expect = 8e-05
Identities = 24/88 (27%), Positives = 44/88 (50%)
Frame = +2
Query: 197 SLLNQGRHIDALKLVLNNAPLGSSNQQVKENALTLTLKVLLAIKSAQIEEAVGSLSLDDI 376
+LL Q + ++ALK L PL + +++ K + + ++AI+ ++ SL +
Sbjct: 31 TLLKQSKPVEALKTALEGTPLKTRDERCKSANWIVVHRAMMAIRD--VDGMFNSLDPEYY 88
Query: 377 DNLMKYIYKGFEFPSEGSSGHLLXWHDK 460
D LMKY+Y+G + L H+K
Sbjct: 89 DILMKYLYRGLSTGDRPTCDQCLKIHEK 116
>09_04_0435 - 17545879-17546605,17546721-17546782,17547123-17547335,
17547506-17547590,17547904-17548061,17548174-17548294,
17548765-17548927,17548973-17549097,17550800-17550888,
17550970-17551636,17552671-17552717,17553506-17553862
Length = 937
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 113 IDQYNEDNFKEDEAEQAGPTGPDEGEVCSLL--NQGRHIDALKLVLNNAPLGSSNQQVKE 286
+DQ E QAG G DEG+V NQG+H D+ + ++ + SSN+++ E
Sbjct: 848 VDQAAEVEMLHQHQHQAGRGGWDEGDVMPFFYSNQGKHHDSSR----SSNISSSNRKLTE 903
Query: 287 NALTL 301
T+
Sbjct: 904 QRRTI 908
>09_02_0481 - 9772783-9773985
Length = 400
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 270 LDDPSGALFNTSLSASICLP*FNNEHTSPSSGPVGPAC 157
+++ G + NT F NEH P + P+GP C
Sbjct: 131 IEESHGLIINTFHGLEAPYIKFWNEHVGPRAWPIGPLC 168
>08_01_0430 + 3774769-3774966,3776951-3777142
Length = 129
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 128 EDNFKEDEAEQAGPTGPDEGEVCSLLNQGR 217
E+ +E+E + A GPD +CSLL QGR
Sbjct: 3 EEKKEEEEEKAAAAEGPDL--LCSLLEQGR 30
>02_05_0685 + 30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 27.9 bits (59), Expect = 4.3
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +2
Query: 158 QAGPTGPDEG-EVCSLLNQGRHIDALKLVLNNAPLGSSNQQVK-ENALTLTL----KVLL 319
Q PTG E ++ ++ + R +D V+ PLG + ++ EN L L + KVLL
Sbjct: 846 QIEPTGWKEFLQISKVIQEARALDINTQVIY--PLGETAAAIRGENELWLAMVLRNKVLL 903
Query: 320 AIKSAQIEEAVGSLSLDDI 376
+K +Q+ GSL + I
Sbjct: 904 DLKPSQLAAICGSLVSEGI 922
>03_05_0541 +
25381403-25382077,25382555-25383904,25386267-25386402,
25386642-25387126
Length = 881
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 74 AKNTLSSAFRKIDIDQYNEDNFKEDEAEQAGPTGPDEGE 190
AK+ + + D D+Y+ED+ +D E G TG DE E
Sbjct: 842 AKDAIFGSTDSSDDDEYDEDDDTDDNDEDEGITG-DEVE 879
>09_02_0477 - 9737851-9739356
Length = 501
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 207 FNNEHTSPSSGPVGPAC 157
F NEH P + P+GP C
Sbjct: 265 FWNEHVGPRAWPIGPLC 281
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 77 KNTLSSAFRKIDIDQYNEDNFKEDEAEQAGPTGPDE 184
K T +A+ D D+YN++N ED+ + A PD+
Sbjct: 190 KPTKYNAYEDEDDDEYNDENDDEDD-DDADEDDPDD 224
>06_03_1073 -
27373259-27373304,27373542-27373624,27373719-27374397,
27374493-27374563,27374635-27374727,27375855-27375928,
27376016-27376073,27376212-27376349
Length = 413
Score = 27.1 bits (57), Expect = 7.5
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +2
Query: 65 TIMAKNTLSSAFRKIDIDQYNEDNFKEDEAEQAGPTGPDEG-EVCSLLNQGRHIDALKLV 241
+++ +L+S+ +++ +Y D + +A + + DE EVCSL
Sbjct: 263 SVVKGESLNSSHFPLEVSKYQLDRQRLLDAGERSKSNSDENIEVCSLSRW---------- 312
Query: 242 LNNAPLGSSNQQVKENAL 295
L ++P G++NQ EN L
Sbjct: 313 LKSSPAGNTNQMYDENNL 330
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 27.1 bits (57), Expect = 7.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 348 ASSICADLIASNTFKVRVNAFSFTC*LDDPSGALFNTSLSASIC 217
A+S A +A+ + + SF L+DPSGAL S S C
Sbjct: 25 AASAAAPAVAAMPVQPQELLLSFRSSLNDPSGALSTWSRSTPYC 68
>11_06_0361 - 22711200-22712180,22712523-22712729,22715205-22715903,
22717848-22717979,22720422-22721180,22721241-22721453
Length = 996
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 188 EVCSLLNQGRHIDALKLVLNNAPLGSSNQQVKEN 289
E+CS ++ R++++L + L+ GSS+ ++KE+
Sbjct: 944 ELCSAVSCHRYLESLSVRLDKDEHGSSDDRLKED 977
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 71 MAKNTLSSAFRKIDIDQYNEDNFKEDEAEQAGPTGPDEGEVCSLLNQGRHIDALKLVLNN 250
+A+N +S ++ + +ID +N N A + + S +N H D LNN
Sbjct: 792 LAENQMSLSWNQEEIDNHNLHNRNLSGAHSLSDGDSNYEDPSSSVNSASHSDN---ELNN 848
Query: 251 APLGSSNQQVKE 286
+ GS++ ++ E
Sbjct: 849 SQYGSNDIKLNE 860
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,999,977
Number of Sequences: 37544
Number of extensions: 164044
Number of successful extensions: 375
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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