Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   3.9  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    25   6.8  

>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 409 NRHFVCAFVHHSPEWLNQFR*GIQFFIFLYYSVYNITKVY 290
           NR F+C+  H    W N+   G +FF+ +  S  N+   Y
Sbjct: 414 NRSFICSLPHFLRRWSNEH--GRKFFVPVEPSSKNLKVPY 451


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 188 LVKCISNFYGQNATRVSSFSDTSIVSIF-KS*PNIVHFCNIVHTVIQEYKKLDTLSKLVQ 364
           L KC +++Y QNA   S   D SI   F K    IVH    V  V    + L   + L+ 
Sbjct: 144 LQKCTASYYHQNACPSSLALDKSISEAFAKVDHQIVH--EHVSHVFNNPESLQVAASLLL 201

Query: 365 P 367
           P
Sbjct: 202 P 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,839
Number of Sequences: 5004
Number of extensions: 43755
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)