Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0366 - 15202400-15202413,15202888-15202979,15203101-152031...    29   3.0  
05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117           27   9.1  
01_01_0008 + 34743-34939,35027-35072,35517-35668,35818-35877,365...    27   9.1  

>06_02_0366 -
           15202400-15202413,15202888-15202979,15203101-15203171,
           15203275-15203334,15203582-15203685,15203746-15203800
          Length = 131

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 363 SHSGEWCTNAQTKCLLTILLYVILSTHF 446
           S+  EW T   T  LLTI L+  ++ H+
Sbjct: 84  SNGNEWTTTISTMSLLTIKLFTAIAPHY 111


>05_02_0149 + 7107830-7108095,7109115-7109229,7109917-7110117
          Length = 193

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 237 PLLVTPV*LASSN-LSRISYTFVILYTL*YRNIKNWIPYRNWFSHSGEWCT 386
           P L TP  L ++   S +SYTF    T  Y+   +  PY N      EW T
Sbjct: 74  PFLSTPRKLKNNGPKSNLSYTFFFAKTPLYKESMSIPPYANQTFFGLEWIT 124


>01_01_0008 +
           34743-34939,35027-35072,35517-35668,35818-35877,
           36594-36818,36892-37033,37276-37326,37434-37525,
           38319-38445,38670-38751,38939-39046,39135-39189,
           39456-39602,39703-39781,39885-40007
          Length = 561

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 510 HQYGVQPSHLSSFKILYKYY--MENA*KELHIIKSLTDILSVRSCT 379
           H+YG+ P   S   +LYK +   + +   LH   SLTD++ +++CT
Sbjct: 343 HKYGLAPKGTSI--VLYKNHEIRKISWLSLHNYYSLTDMIMLQNCT 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,598,176
Number of Sequences: 37544
Number of extensions: 244722
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)