Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324C02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.0
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 29 2.7
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 29 2.7
U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical pr... 27 6.2
Z49910-1|CAA90118.1| 160|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z37092-2|CAA85453.1| 555|Caenorhabditis elegans Hypothetical pr... 27 8.1
U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical pr... 27 8.1
U23514-1|AAC46543.1| 817|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF304128-1|AAG50241.1| 160|Caenorhabditis elegans NADH ubiquino... 27 8.1
AF106577-13|AAC78186.1| 465|Caenorhabditis elegans Hypothetical... 27 8.1
>Z75535-3|CAH04733.1| 495|Caenorhabditis elegans Hypothetical
protein F14B4.2b protein.
Length = 495
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 481 KLFQNTLQILHGKCVERITYNKIVNRHFVCAFV 383
+ FQ T QIL VE IT N N +VC+ +
Sbjct: 367 RTFQKTYQILEDIGVEMITANDCANVAYVCSLI 399
>Z75535-2|CAA99826.1| 500|Caenorhabditis elegans Hypothetical
protein F14B4.2a protein.
Length = 500
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 481 KLFQNTLQILHGKCVERITYNKIVNRHFVCAFV 383
+ FQ T QIL VE IT N N +VC+ +
Sbjct: 372 RTFQKTYQILEDIGVEMITANDCANVAYVCSLI 404
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 338 LDTLSKLVQPFRRMVHERTDKMSVNDFIICNSFYAFSM 451
L T+S+ +PF +HE K + + CN F+ F++
Sbjct: 279 LQTVSEWNKPFHTFLHENIFKRRLFNSTACNVFFTFAV 316
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 338 LDTLSKLVQPFRRMVHERTDKMSVNDFIICNSFYAFSM 451
L T+S+ +PF +HE K + + CN F+ F++
Sbjct: 279 LQTVSEWNKPFHTFLHENIFKRRLFNSTACNVFFTFAV 316
>U00063-3|AAK18959.2| 446|Caenorhabditis elegans Hypothetical
protein F56C9.3 protein.
Length = 446
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 TLELISQGVWRIYVLDVYGLQ*PLNTGW 87
+++LI V RI+ VYG++ P+N W
Sbjct: 218 SVQLIISSVRRIHDAAVYGIKDPINVSW 245
>Z49910-1|CAA90118.1| 160|Caenorhabditis elegans Hypothetical
protein F44G4.2 protein.
Length = 160
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 9 RTYISRCVAHLRSRCLWA 62
RTYI RCV + S +WA
Sbjct: 89 RTYIDRCVTYFISAVIWA 106
>Z37092-2|CAA85453.1| 555|Caenorhabditis elegans Hypothetical
protein F44F4.2 protein.
Length = 555
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 282 RISYTFVILYTL*YRNIKNWI-PYRNWFSH 368
R+S + V+LY YR I WI PY N + H
Sbjct: 495 RLSVSSVLLYLFIYRVILRWIEPYVNKWYH 524
>U53151-5|AAB37068.1| 476|Caenorhabditis elegans Hypothetical
protein T05B11.4 protein.
Length = 476
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +3
Query: 324 RNIKNWIPYRNWFSHSGEWCTNAQTKCLLTILLYVILSTHF 446
R + W+P W S SG KC++ I+ H+
Sbjct: 356 RQLDKWMPTHRWHSSSGIGPPGHTAKCIVDTSKVFIMFIHY 396
>U23514-1|AAC46543.1| 817|Caenorhabditis elegans Hypothetical
protein F48E8.6 protein.
Length = 817
Score = 27.1 bits (57), Expect = 8.1
Identities = 7/26 (26%), Positives = 17/26 (65%)
Frame = +2
Query: 290 VHFCNIVHTVIQEYKKLDTLSKLVQP 367
+ CN+V+ ++ YK ++ + +V+P
Sbjct: 768 IQMCNVVYVILVPYKSIEVSATIVRP 793
>AF304128-1|AAG50241.1| 160|Caenorhabditis elegans NADH ubiquinone
oxidoreductaseAGGG subunit protein.
Length = 160
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 9 RTYISRCVAHLRSRCLWA 62
RTYI RCV + S +WA
Sbjct: 89 RTYIDRCVTYFISAVIWA 106
>AF106577-13|AAC78186.1| 465|Caenorhabditis elegans Hypothetical
protein F46F5.7 protein.
Length = 465
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = +3
Query: 330 IKNWIPYRNWFSHSGEWCTNAQTKCLLTILLYVILSTHF 446
+ W+P R W + SG KC++ I+ H+
Sbjct: 347 LDKWMPTRRWHNSSGIGSPGHTAKCIVDTSKVFIMFVHY 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,121
Number of Sequences: 27780
Number of extensions: 245101
Number of successful extensions: 644
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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