Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    29   0.42 
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    28   0.97 
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    27   2.2  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   5.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   5.2  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   6.8  
SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    25   9.0  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 411 SVKSTSNFSLMCSHCLNDFFHISLLRIHPFSIRG 512
           S  S +N    C+ CL  F   S L+IH +S  G
Sbjct: 459 STSSAANVRYRCTECLQGFSRPSSLKIHTYSHTG 492


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 87  FVSVALTVVWFFRCEYSNMFTASASVALFGLTVFY--SVAIFGLYLSDTFQFDRRHQ 251
           F +V L  +  F  +++ +F A  S  L G+T F   SVA+ G+ +     F+RR++
Sbjct: 425 FCAVILFFMGLF-AKFAAVFVAIPSPVLGGMTTFLFSSVAVSGIAIISQIPFNRRNR 480


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 123 RCEYSNMFTASASVALFGLT 182
           R  YSN+F+A+A +ALF  T
Sbjct: 2   RIPYSNLFSAAAGLALFAST 21


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 495 GEFVREKCEKNHSNSENTLN 436
           G  V E+C+++ SNSEN ++
Sbjct: 707 GHSVHERCQQSTSNSENQMD 726


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 203 IRPLSLRHIPVRPTTPAA 256
           + PL L H P  PT+PAA
Sbjct: 431 VSPLQLNHTPGFPTSPAA 448


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 164 SIVRSDGVLQCCHIRPLSLRHIPVRPTTPAANDEQLNCL 280
           +I+  DG L  C ++PL L+ +    T    ND+++  +
Sbjct: 734 NILVKDGTLNFCFLKPLLLKWMNDYETRIHQNDDEIQVI 772


>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 142 MFEYSHLKNHTTVRATETNVIRMFSKS 62
           +F+  HL+N T+  + E N++RM   S
Sbjct: 169 IFDCLHLENSTSEGSAEKNLVRMLCYS 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,405
Number of Sequences: 5004
Number of extensions: 34694
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)