Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1511 + 27276736-27276998,27277090-27277267,27277740-272784...    30   0.98 
06_03_0132 + 17024727-17025265,17025424-17025510,17025617-170256...    30   0.98 
10_07_0012 - 11791524-11791957,11792014-11792108,11792163-117922...    28   5.2  
09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204           28   5.2  
06_03_0126 + 16978566-16979104,16979279-16979365,16979481-169795...    28   5.2  
03_01_0338 - 2667578-2668659,2668771-2668828                           27   6.9  
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323...    27   9.1  

>07_03_1511 +
           27276736-27276998,27277090-27277267,27277740-27278436,
           27278674-27278756,27278790-27279293,27279504-27279920
          Length = 713

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 208 PNMATL*NTVRPNNATLALAVNMFEYSHLKNHTTVRATETNVIRMFSKS 62
           P  A L   +  +  T A  +NM ++++   HTT+R     V+  F+KS
Sbjct: 281 PTRAQLLEKLTTSMQTKARLINMLDWTNGNQHTTIRLYAAKVMAEFAKS 329


>06_03_0132 +
           17024727-17025265,17025424-17025510,17025617-17025673,
           17028754-17028992,17029161-17029279,17029395-17029481,
           17029570-17029629
          Length = 395

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 75  ILMTFVSVALTVVWFFRCEYSNMFTASASVA 167
           +L+T VSV L VVWF+  +   +F   A +A
Sbjct: 30  LLLTAVSVPLAVVWFYTGDILRLFGQEADIA 60


>10_07_0012 -
           11791524-11791957,11792014-11792108,11792163-11792226,
           11792327-11792591,11792670-11793127,11793271-11793592
          Length = 545

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 390 QK*RHNRSVKSTSNFSLMCSHCLNDFFHISLLRIHP 497
           QK R+    K   +  L+C+H L  F H  + +I P
Sbjct: 334 QKGRYECECKQWEHTGLLCTHLLRTFIHAQVEKIPP 369


>09_02_0395 - 8536630-8537678,8537716-8537783,8538110-8538204
          Length = 403

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +3

Query: 114 WFFRCEYSNMFTA--SASVALFGLTVFYSVA---IFGLYLSDTFQFDRRHQPPTTNN*IV 278
           WF   EY ++FTA  S     F +  F +VA   +FGL +S  F F  R     T   + 
Sbjct: 260 WFLTGEYKSLFTAIESRGERWFQVDAFVAVALSCVFGLLIS-FFGFATRKAISATAFTVT 318

Query: 279 *AGNIIFIDVQIF*SVPLLENHEHPISLI 365
              N  F+ V I  +V + + H  P  LI
Sbjct: 319 GVVN-KFLTVAI--NVLIWDKHSSPFGLI 344


>06_03_0126 +
           16978566-16979104,16979279-16979365,16979481-16979537,
           16979648-16979886,16981776-16981894,16982010-16982096,
           16983898-16983971,16984483-16984547,16984581-16984961,
           16985136-16985401
          Length = 637

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 75  ILMTFVSVALTVVWFFRCEYSNMFTASASVA 167
           +L+T VSV L VVWF+  +    F   A +A
Sbjct: 30  LLLTAVSVPLVVVWFYTGDILVAFGQDADIA 60


>03_01_0338 - 2667578-2668659,2668771-2668828
          Length = 379

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 423 TSNFSLMCSHCLNDFFHISL 482
           T+N S +CSH L D  HI L
Sbjct: 127 TANASFLCSHLLKDIEHIRL 146


>08_02_0182 -
           13930436-13931245,13931348-13931627,13931788-13932324,
           13932482-13932579,13932678-13933118
          Length = 721

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +3

Query: 60  WDLENILMTFVSVALTVVWFFRCEYSNMFTASASVALFGLTVFYSVAIFGLY 215
           W L   +   V       W+ R  Y       A VA  G+  F S+  F +Y
Sbjct: 636 WGLVGFVFNHVVYRRCRAWWMRHNYVLAAGLDAGVAFMGVLTFVSLGYFDIY 687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,206,641
Number of Sequences: 37544
Number of extensions: 220111
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)