Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324C01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical pr... 33 0.16
AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H... 33 0.16
AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H... 33 0.16
Z49911-3|CAA90126.2| 735|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 29 2.7
AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 29 2.7
Z81046-2|CAB02824.1| 295|Caenorhabditis elegans Hypothetical pr... 28 3.5
>Z69646-4|CAD36489.1| 611|Caenorhabditis elegans Hypothetical
protein F57C7.2b protein.
Length = 611
Score = 32.7 bits (71), Expect = 0.16
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 75 ILMTFVSVALTVV---WFFRCEYSNMFTASASVALF-GLTVFYSVAIFGLYLSDTFQFD 239
IL+T+VSV + +V W F+ Y F + V LF GL + + + FGL L + FD
Sbjct: 45 ILLTYVSVMVLIVVTAWAFK-HYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFD 102
>Z69646-3|CAA93476.2| 630|Caenorhabditis elegans Hypothetical
protein F57C7.2a protein.
Length = 630
Score = 32.7 bits (71), Expect = 0.16
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 75 ILMTFVSVALTVV---WFFRCEYSNMFTASASVALF-GLTVFYSVAIFGLYLSDTFQFD 239
IL+T+VSV + +V W F+ Y F + V LF GL + + + FGL L + FD
Sbjct: 45 ILLTYVSVMVLIVVTAWAFK-HYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFD 102
>AF497829-1|AAM18107.1| 611|Caenorhabditis elegans putative Na-H
exchanger isoform 5b protein.
Length = 611
Score = 32.7 bits (71), Expect = 0.16
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 75 ILMTFVSVALTVV---WFFRCEYSNMFTASASVALF-GLTVFYSVAIFGLYLSDTFQFD 239
IL+T+VSV + +V W F+ Y F + V LF GL + + + FGL L + FD
Sbjct: 45 ILLTYVSVMVLIVVTAWAFK-HYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFD 102
>AF497828-1|AAM18106.1| 630|Caenorhabditis elegans putative Na-H
exchanger isoform 5a protein.
Length = 630
Score = 32.7 bits (71), Expect = 0.16
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +3
Query: 75 ILMTFVSVALTVV---WFFRCEYSNMFTASASVALF-GLTVFYSVAIFGLYLSDTFQFD 239
IL+T+VSV + +V W F+ Y F + V LF GL + + + FGL L + FD
Sbjct: 45 ILLTYVSVMVLIVVTAWAFK-HYRFRFIHESGVTLFYGLLIGFVIRYFGLGLLQSQTFD 102
>Z49911-3|CAA90126.2| 735|Caenorhabditis elegans Hypothetical
protein M28.4 protein.
Length = 735
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +3
Query: 24 ELITERPQPERSWDLENILMTFVSVAL---TVVW--FFRC--EYSNMFTASASVALFGLT 182
+L+ +P P W L ++ FV++AL T +W F+ C + ++ + + GL
Sbjct: 87 DLVAGQPGPTIFWKL-GFILVFVTLALCIVTAIWLCFYSCAPKKNSSDSKITGIVYAGLL 145
Query: 183 VF-YSVAIFGLYLSDTFQFD 239
V +++A+ GL L +T + D
Sbjct: 146 VITFAIALNGLILFNTAESD 165
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 191 QCCHIRPLSLRHIPVRPTTPAAND 262
+C +RP S H PVRP TPAA D
Sbjct: 91 ECVCMRPYSSPHSPVRP-TPAAPD 113
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 191 QCCHIRPLSLRHIPVRPTTPAAND 262
+C +RP S H PVRP TPAA D
Sbjct: 91 ECVCMRPYSSPHSPVRP-TPAAPD 113
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 191 QCCHIRPLSLRHIPVRPTTPAAND 262
+C +RP S H PVRP TPAA D
Sbjct: 91 ECVCMRPYSSPHSPVRP-TPAAPD 113
>AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 191 QCCHIRPLSLRHIPVRPTTPAAND 262
+C +RP S H PVRP TPAA D
Sbjct: 91 ECVCMRPYSSPHSPVRP-TPAAPD 113
>Z81046-2|CAB02824.1| 295|Caenorhabditis elegans Hypothetical
protein C37E2.3 protein.
Length = 295
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/70 (22%), Positives = 32/70 (45%)
Frame = +3
Query: 36 ERPQPERSWDLENILMTFVSVALTVVWFFRCEYSNMFTASASVALFGLTVFYSVAIFGLY 215
+ P SW + + +TF + + V ++ + S S+ LF ++ SV IF +
Sbjct: 214 DAPSNSTSWMISVVYVTFYFIIVLGVKYYNRMWVYPVLQSFSIDLFVISYILSVVIFFIL 273
Query: 216 LSDTFQFDRR 245
L + +R+
Sbjct: 274 LKAACKLNRQ 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,774,648
Number of Sequences: 27780
Number of extensions: 205739
Number of successful extensions: 496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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