Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    28   0.97 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   3.9  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   3.9  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   3.9  
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    25   5.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.0  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   9.0  

>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 NIPNKERKHGSCLN*WNS 230
           NIP+ E K GSC+N W S
Sbjct: 413 NIPDYETKPGSCINEWAS 430


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 9/95 (9%)
 Frame = +2

Query: 242 WPSFIKYVKNWMFSNFIIRPYFDQEFSLNEFIEASK-HAVQIV--------SGALQNSDF 394
           W   I+ +   + + FI+R + DQ   L E +  S  HA  +V        S    +S +
Sbjct: 564 WHLIIERILGNVINGFIVRSHHDQ-LILKELMRQSNCHATVVVGKYDPFDYSSGEPDSQY 622

Query: 395 KTLEGLVDKDAINALKTAVSQLSVSQRQLLAIEKE 499
            T+  ++  D    L T ++ L + +  L+   +E
Sbjct: 623 PTVLKIIKFDDDEVLHTLINHLGIEKMLLIEDRRE 657


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +2

Query: 353 AVQIVSGALQNSDFKTLEGLVDK-DAINALKTAVSQLS 463
           +V++ +G  +NS F+T+E L++  D  N+  T +SQL+
Sbjct: 664 SVKVKNGDYENSSFETIENLIESFDYENS--TPLSQLT 699


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = +2

Query: 194 TETRKLPQLMEFPPIMWPSFIKYVKNWMFSNFIIRPYFDQEFSLNEFIEASKHAVQI--- 364
           TE + + +  ++P  +  +    +K+ +  ++ +RP  DQ  S   F E   H+  I   
Sbjct: 233 TEQKIINECPQYPETLSKNSSSLLKSLLCKDYRLRPSIDQIISHPYFKENGYHSSSIRDP 292

Query: 365 -VSGALQNSDFKTLEGL-VDKDAINA 436
             S   +    K LE + VD D +NA
Sbjct: 293 RPSSKAEEKVRKRLEFVGVDMDQLNA 318


>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 359 QIVSGALQNSDFKTLEGLVDKDAINALKTAVSQLSVSQRQLLAI 490
           QIV   L  ++ K L   +DK   NAL   V+Q+      L A+
Sbjct: 316 QIVGDDLTVTNVKRLRTAIDKKCANALLLKVNQIGSVTESLNAV 359


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
 Frame = +2

Query: 284 NFIIRPYFDQEFSL---NEFIEASKHAVQIVSGALQNSDFKTLEGL-----VDKDAINAL 439
           N  +  YFD+ F++   N   E+ K     ++   Q S+  +++ L      +K A+NA+
Sbjct: 100 NVAVDMYFDESFNIKNSNPDSESQKDTDASLTQMDQLSNTVSVKDLSINRNTNKKALNAV 159

Query: 440 KTAVSQLSVSQRQLLAIEKEDI 505
             +++  S S  Q ++I+KE++
Sbjct: 160 SPSLNLSSNSSVQDVSIDKEEM 181


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 363 LFQEHYKTVISKL*RVWWIK 422
           LFQE   ++I K+ R+W+ K
Sbjct: 182 LFQEELPSIIYKMSRIWFAK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,039
Number of Sequences: 5004
Number of extensions: 41676
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)