Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1262 - 25273421-25273909,25273966-25274211                       27   6.9  
12_02_0346 - 17776871-17781445                                         27   9.1  
12_02_0343 - 17748882-17753396                                         27   9.1  

>07_03_1262 - 25273421-25273909,25273966-25274211
          Length = 244

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 208 VASIDGIPADNVAFIHKIRKELDVFKFYY 294
           VASI G PAD  AF+  +  ++D    ++
Sbjct: 32  VASISGSPADEAAFVAALAADIDKIDSFF 60


>12_02_0346 - 17776871-17781445
          Length = 1524

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 188  QGTETRKLPQLMEFPPIMWPSFIKYV 265
            Q  +  + P+L+ FPPI W + + YV
Sbjct: 980  QKIKISECPKLLSFPPIPWTNSLLYV 1005


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 188  QGTETRKLPQLMEFPPIMWPSFIKYV 265
            Q  +  + P+L+ FPPI W + + YV
Sbjct: 981  QEIKISECPKLLSFPPIPWTNSLLYV 1006


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,155,031
Number of Sequences: 37544
Number of extensions: 221166
Number of successful extensions: 467
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)