Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.62 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.62 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   5.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 110 IAYNNVPKQIAITSKCPIIQYRKYSEQGTE 199
           +A +     + +   CP  +YR Y++ G+E
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSE 278


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 110 IAYNNVPKQIAITSKCPIIQYRKYSEQGTE 199
           +A +     + +   CP  +YR Y++ G+E
Sbjct: 249 VAQDESTSLVCVAQACPTPEYRWYAQTGSE 278


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 517 KCIKYIFFF 491
           KC++Y+FFF
Sbjct: 397 KCLEYLFFF 405


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 517 KCIKYIFFF 491
           KC++Y+FFF
Sbjct: 397 KCLEYLFFF 405


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +2

Query: 86  QSLRLCDKIAYNNVPKQIA 142
           + ++  D++ Y  +PKQ+A
Sbjct: 386 EEMKRTDELLYQMIPKQVA 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,896
Number of Sequences: 438
Number of extensions: 3170
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)