Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.73 
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    27   2.2  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   3.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   3.9  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   6.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   9.0  

>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 108 LYDLVLRAILKLKKKHINRQSVLNKY---H*ISQWWSFSPLRSKQRAYLRGMR 257
           ++D +L   + LKK+HI   S+   +     + Q+W F+ +  ++  YL+  +
Sbjct: 93  IFDFILTGFIYLKKEHIASNSLTFTFAFCDLMWQFWMFAAMSEERAKYLKNQK 145


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 290 VDAEATVPDSVTSISALCTMADTNI 364
           +DA  T PD++  +S  CT+  T I
Sbjct: 50  IDASFTDPDAIVELSKKCTLLTTEI 74


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 193 YHSGGRFLHYEVNKGPICVECGRRNPIGK 279
           Y  G  + H E  K P+     RRNP GK
Sbjct: 262 YTVGPHYSHAETRKSPVVDGIVRRNPHGK 290


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 447 LNKPLNDMGVYDIFQPDLANFQR 379
           L++   D+ V+  FQP LANF++
Sbjct: 253 LDETETDVEVFSCFQPQLANFKK 275


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 410 MSYTPMSFNGLFRTTLVLIWNL 475
           +SY  MSF G+    L LIWN+
Sbjct: 325 LSYPVMSFYGVRGILLKLIWNI 346


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 477 PRFQISTNVVLNKPLNDMG 421
           P  QI  ++VLNKP++ +G
Sbjct: 534 PLLQIEKSLVLNKPIHQIG 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,377
Number of Sequences: 5004
Number of extensions: 34607
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)