Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0918 + 32990106-32992196                                         29   2.3  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    27   9.1  

>01_06_0918 + 32990106-32992196
          Length = 696

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 39  LWPFLGICAEVVVLCA--VILFYEKRRTKPELDDSDTD 146
           LW  LG+C  ++VL A  V+ F  + R   EL D D D
Sbjct: 280 LWVVLGLCGLLLVLVAAGVLWFVSQWRKAGELADGDID 317


>01_03_0014 +
           11655216-11655287,11657833-11658048,11659848-11661912,
           11662966-11663013,11663081-11663328,11663429-11663558,
           11663707-11663983,11664102-11664180,11664311-11664397,
           11664586-11664618
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 27  VYDA-LWPFLGICAEVVVLCAVILFYEKRRTKPELDDSDTDNH 152
           V++A L  FLG+CA      +V   +++R  K  LD  D  +H
Sbjct: 629 VFNANLSTFLGLCAVQQCTASVDCIHDQRSQKYYLDPKDVSDH 671


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,861,790
Number of Sequences: 37544
Number of extensions: 170605
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)