Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z99283-3|CAB16538.1|  327|Caenorhabditis elegans Hypothetical
           protein Y70C5C.4 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 48  FLGICAEVVVLCAVILFYEKRRTKPELDDSDTDNHDQKK 164
           + GI + +V   AV+LF+E+R  +    D+DT +   K+
Sbjct: 99  YFGITSLLVTAVAVLLFFEERYNRLLRRDADTQSRFIKR 137


>AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical
           protein F57E7.3 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 24  GVYDALWPFLGICAEVVVLCAVILFYEKRRTKPELDDSDTDNHDQKK 164
           GV  ++  ++G  + +  + A+ILF+E+R  +    DSDT     K+
Sbjct: 91  GVPTSVMVYIGATSILFFVPAIILFFEERYNRLLRRDSDTKRRKIKR 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,390,767
Number of Sequences: 27780
Number of extensions: 159723
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)