Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324B07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 66 3e-12
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 30 0.24
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 28 0.73
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 28 0.73
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 28 0.73
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.0
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 26 3.0
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 26 3.9
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S... 25 5.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 5.2
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 6.8
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 25 9.0
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 9.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.0
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 66.1 bits (154), Expect = 3e-12
Identities = 30/74 (40%), Positives = 45/74 (60%)
Frame = +3
Query: 66 LIRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFE 245
+I+ DMSE+M+ EA+ +V A EKF ++AA +K DKKF P +H +VG ++G
Sbjct: 3 VIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAA-FIKREFDKKFSPTWHCIVGRNFGSF 61
Query: 246 ITYECTTICYMYFG 287
+T+E Y Y G
Sbjct: 62 VTHESRHFIYFYLG 75
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 29.9 bits (64), Expect = 0.24
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 369 RVYFVSNKVRFILIIVNTFMNSLDKRK*RLFTKSTGDI 482
RV+ V+N+++F V T N L + RLFT + G+I
Sbjct: 307 RVFAVANQIKFAPATVITIPNQLSRPVFRLFTFAEGEI 344
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 183 SMDKKFGPAFHVVVGESYGFEITYECTTI 269
S + +GPA +V+VGESY +C +
Sbjct: 378 SFAQTWGPAAYVIVGESYPIRYRSKCAAV 406
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 183 SMDKKFGPAFHVVVGESYGFEITYECTTI 269
S + +GPA +V+VGESY +C +
Sbjct: 378 SFAQTWGPAAYVIVGESYPIRYRSKCAAV 406
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 0.73
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 183 SMDKKFGPAFHVVVGESYGFEITYECTTI 269
S + +GPA +V+VGESY +C +
Sbjct: 378 SFAQTWGPAAYVIVGESYPIRYRSKCAAV 406
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -2
Query: 499 KSTPLSISPVDFVNNLYFRLSREFMKVFTIIKMNRTLFDTK*TLSLNNVTETFPKYVTAY 320
KSTP + P +F+NN R F +K +L+ + LN ++ + Y
Sbjct: 242 KSTPDNSLPPNFINNHSNVFRRSFHTCNFSLKSAASLYCDTQDILLNVNSQNLTSTLEKY 301
Query: 319 EHFHMQ 302
+ H+Q
Sbjct: 302 KKMHLQ 307
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 183 SMDKKFGPAFHVVVGESYGFEITYECTTI 269
S + + PA +V+VGESY +C +
Sbjct: 348 SFSQTWAPAAYVIVGESYPVRYRSKCAAV 376
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 183 SMDKKFGPAFHVVVGESYGFEITYECTTI 269
S + + PA +V+VGESY +C +
Sbjct: 380 SFAQTWAPAAYVIVGESYPIRYRSKCAAV 408
>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
S8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 165 RPTHCSVRISRKPSRKVPLPPSASLQ 88
+P +R KPSRKV L PS LQ
Sbjct: 80 KPVLHYIRAVSKPSRKVNLTPSELLQ 105
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = -2
Query: 469 DFVNNLYFRLSREFMKVFTIIKMNRTLFDTK*TLSLNNVTETFPKYVTAYEHFHMQI 299
D ++ Y RL ++F+++ +K ++ + K ++ E KY+ ++ H Q+
Sbjct: 427 DILSLCYIRL-KDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSFHEKHQQL 482
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 232 LSPTTTWKAGPNFLSMDSLTILAANS 155
+S +T K P +SMDS TIL NS
Sbjct: 66 ISAPSTKKMSPMDISMDSPTILEPNS 91
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 198 FGPAFHVVVGESYGFEITYECTTI 269
+ PA +V+VGESY +C +
Sbjct: 387 WAPAAYVIVGESYPVRYRSKCAAV 410
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 257 VHNHMLHVFWREPSDLHMEVLVSCNVFWKRFCD 355
+HN + F E DLH+ L + +F R+ D
Sbjct: 1123 IHNALTRAFKHENGDLHISDLRNTGLFPLRYGD 1155
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 319 EHFHMQIAWFPPKYM*HMVVHSYVISK 239
E+ QIAW P KY + VV + SK
Sbjct: 453 EYVREQIAWTPIKYFNNKVVCDLIESK 479
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,596
Number of Sequences: 5004
Number of extensions: 43829
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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