Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324B07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 48 5e-06
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749 44 7e-05
01_05_0324 - 20946774-20946935,20947301-20947780 42 3e-04
02_04_0361 - 22359278-22359439,22362291-22362728 39 0.002
01_06_0783 + 31975261-31975398,31975583-31975726 36 0.026
01_01_0686 - 5260189-5261898 29 1.7
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326... 29 2.3
08_01_0298 - 2406254-2406322,2406444-2406541,2408652-2408769,240... 29 3.0
04_04_1300 - 32457901-32457985,32458375-32459468 28 4.0
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 28 5.2
06_01_0772 + 5770502-5770619,5771035-5772335 28 5.2
03_06_0491 - 34295484-34295793,34297160-34297644 27 6.9
11_01_0580 + 4624111-4624549,4625243-4625955 27 9.1
01_03_0151 - 13229861-13230347,13230442-13230540,13230701-132309... 27 9.1
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +3
Query: 69 IRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFE 245
++ +DM EEMR EA +++ A EK ++ A +K+ DK GP +H +VG ++ E
Sbjct: 49 LKSADMKEEMRQEAFDIARVAFEKHTMEKDI-AEYIKKEFDKNHGPTWHCIVGRNFDKE 106
>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
Length = 135
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 69 IRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYG 239
I+ ++M EEMR EA ++ A EK ++ +KE DK GP +H +VG ++G
Sbjct: 61 IKSANMKEEMRQEAFDIDRVAFEKHTMEKDIV-EYIKE-FDKNHGPTWHCIVGHNFG 115
>01_05_0324 - 20946774-20946935,20947301-20947780
Length = 213
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +3
Query: 78 SDMSEEMRTEA---VELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEI 248
+DMS M+ A + S + +KF+ A VK+ DK +GP +H +VG SYG +
Sbjct: 125 ADMSPFMQLHAFRCAKRSHDSLDKFSSRQ--LAHDVKKEFDKVYGPTWHCIVGTSYGSFV 182
Query: 249 TYECTTICYMYFGGNQAI 302
T+ C++YF ++ I
Sbjct: 183 TH--ARGCFLYFSMDKII 198
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 69 IRHSDMSEEMRTEAVELSVTACEKFAQ-NNELAARMVKESMDKKFGPAFHVVVGESYGFE 245
+R +DM M+ AV L+ A + +++ A +K+ D +GPA+H +VG +G
Sbjct: 108 VRAADMPLAMQRRAVRLAFDAVAAMPRLDSKRLALALKKEFDATYGPAWHCIVGTGFGSY 167
Query: 246 ITYECTTICY 275
+T+ Y
Sbjct: 168 VTHSVGGFLY 177
>01_06_0783 + 31975261-31975398,31975583-31975726
Length = 93
Score = 35.5 bits (78), Expect = 0.026
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 66 LIRHSDMSEEMRTEAVELSVTACEKF-AQNNELAARMVKESMDKKFGPAFHVVVGESYGF 242
++ +DM +M+ +A+ + A ++F + A +K+ D GP + VVG S+G
Sbjct: 7 MVEDTDMPVKMQLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASFGC 66
Query: 243 EITYECTTICYMYFG 287
T+ + Y G
Sbjct: 67 YFTHSKGSFIYFKLG 81
>01_01_0686 - 5260189-5261898
Length = 569
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 356 CHRNVSKIRYSLRALPYANRLVPAKIHVTYGCALVR 249
C N + +L A PYA L AK +GC +V+
Sbjct: 141 CEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVK 176
>05_01_0414 +
3262886-3262957,3264517-3264597,3265115-3265214,
3265473-3265522,3265581-3265671,3266636-3266715,
3266940-3267005,3267761-3267860,3267934-3268011,
3268165-3268232,3268305-3268373,3268485-3268562,
3269561-3269631,3270632-3270709,3270808-3270913,
3271475-3271579,3272256-3272387,3272464-3272571,
3272655-3272764,3272868-3272963,3273155-3273617
Length = 733
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 317 ALPYANRLVPAKIHVTYGCALVRDFEAVTLADDNMEGRTELLVH 186
A+P N V +KIH TY ++D + DD+ ++H
Sbjct: 263 AIPIKNASVVSKIHQTYRIGYIKDVILPRVLDDSTMASIAAIIH 306
>08_01_0298 -
2406254-2406322,2406444-2406541,2408652-2408769,
2408890-2408980,2409243-2409406,2410027-2410242,
2410405-2410475,2410552-2410619,2412027-2412166
Length = 344
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 60 YPLIRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDK 194
YP I H + SEE+ E + S T C+ ++ + + S +K
Sbjct: 259 YPHIVHEEYSEELGDETCQNSATVCDSDILEEKMVTGLRRVSWEK 303
>04_04_1300 - 32457901-32457985,32458375-32459468
Length = 392
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -2
Query: 271 HMVVHSYVISKP*LSPTTTWKAGPNFLSMDSLTILAANSLFCANFSQAVTESSTASV 101
H +V Y++SK LSP KA P F +DS + A F SQ +T + V
Sbjct: 51 HFMVQ-YLVSKCGLSPAAAAKAAPRFAHLDSASRPDAALAFLR--SQGLTRAQVREV 104
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 105 EAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEITYECTTICY 275
E E S+ E ++ELA ++ +D+ A ++ VG ++ F +T+E +C+
Sbjct: 174 EKPEASILEFECHFNDDELAIESMR-MLDQNNSDAENLYVGPTFHFPLTFEFLIMCF 229
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 132 CEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFE 245
C FAQN L ++++ + + FG F + G+ +GF+
Sbjct: 432 CMTFAQNPALRSQILGNRVTRSFGTTFD-IQGKQFGFK 468
>03_06_0491 - 34295484-34295793,34297160-34297644
Length = 264
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 154 MSWPREWSKSPWTRSSVLPSMLSSARVTASKSRTS 258
M R W ++ W +SVL S RVT S RTS
Sbjct: 208 MPMSRNWGQN-WQSNSVLVGQALSFRVTGSDRRTS 241
>11_01_0580 + 4624111-4624549,4625243-4625955
Length = 383
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 247 SRTSAQPYVTCILAGTKRFAYGSARKL 327
++ + Q Y+ C +AGT F YG+A+ +
Sbjct: 197 AQNNLQVYLRCDIAGTIDFVYGNAKAI 223
>01_03_0151 -
13229861-13230347,13230442-13230540,13230701-13230918,
13231210-13231317,13231366-13231518,13232962-13233015,
13233276-13233374,13234458-13234551,13234638-13234715,
13237696-13237766,13238321-13238416,13238505-13238582,
13238683-13238751,13238830-13238897,13239038-13239115,
13239190-13239289,13240002-13240061,13240488-13240579,
13241730-13241779,13241870-13241954,13242035-13242134,
13242933-13243013,13244827-13244907
Length = 832
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 317 ALPYANRLVPAKIHVTYGCALVRDFEAVTLADDNMEGRTELLVH 186
A+P N V +KIH TY ++D + DD ++H
Sbjct: 266 AIPIKNVSVVSKIHQTYRIGYLKDVILPRVLDDGTLASLNTMIH 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,330,482
Number of Sequences: 37544
Number of extensions: 265758
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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