Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324B07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light ch... 64 8e-11
Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical pr... 46 2e-05
AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical... 45 3e-05
AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical ... 29 2.7
AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical ... 28 4.7
AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical ... 28 4.7
Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 27 8.1
AL022274-2|CAA18358.1| 329|Caenorhabditis elegans Hypothetical ... 27 8.1
>U00043-8|AAC77510.1| 89|Caenorhabditis elegans Dynein light chain
protein 1 protein.
Length = 89
Score = 63.7 bits (148), Expect = 8e-11
Identities = 28/83 (33%), Positives = 53/83 (63%)
Frame = +3
Query: 66 LIRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFE 245
+I+++DMS++M+ +A++ + A EK+ ++AA +K+ DKK+ P +H +VG ++G
Sbjct: 7 VIKNADMSDDMQQDAIDCATQALEKYNIEKDIAA-YIKKEFDKKYNPTWHCIVGRNFGSY 65
Query: 246 ITYECTTICYMYFGGNQAICIWK 314
+T+E Y Y G AI ++K
Sbjct: 66 VTHETKHFIYFYL-GQVAILLFK 87
>Z68507-5|CAA92827.2| 90|Caenorhabditis elegans Hypothetical
protein M18.2 protein.
Length = 90
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +3
Query: 69 IRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEI 248
++ +DM + R + + A + + ++AA VKE +DKKFG +HV+ G+ +G +
Sbjct: 8 VKETDMEDPQRDMVISVVREAQRLYNIDKDVAA-FVKEELDKKFGATWHVICGKCFGSRV 66
Query: 249 TYE 257
+YE
Sbjct: 67 SYE 69
>AC084197-38|AAU87807.1| 186|Caenorhabditis elegans Hypothetical
protein Y73B6BL.43 protein.
Length = 186
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/73 (27%), Positives = 40/73 (54%)
Frame = +3
Query: 69 IRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYGFEI 248
++HS M M EA L+ + + +++A R +K + D+++GP +H + G+ +G +
Sbjct: 60 VQHSRMPRHMEQEACSLAAKSIMTYHLEHDIA-RHLKMAFDREYGPDWHCICGKHFGSFV 118
Query: 249 TYECTTICYMYFG 287
T+E + Y G
Sbjct: 119 TFEPDSFIYFRIG 131
>AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical
protein F23H11.2 protein.
Length = 865
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -2
Query: 487 LSISPVDFVNNL-YFRLSREFMKVFTI-IKMNRTLFDTK*TLSLNNVTET 344
+S P+D + NL YFRLSR+F + + +N L D + ++VTET
Sbjct: 788 ISEVPIDRIENLRYFRLSRQFFEHEEMPTTINMELIDYRNQEIRDSVTET 837
>AL161711-3|CAL63993.1| 129|Caenorhabditis elegans Hypothetical
protein Y10G11A.2b protein.
Length = 129
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 66 LIRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYG 239
+I+ +++ E E+ ++ A + NE+A+ M K D K+G + VVG ++G
Sbjct: 51 IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFM-KRKFDAKYGGHWQCVVGRNFG 107
>AL161711-2|CAD31700.1| 111|Caenorhabditis elegans Hypothetical
protein Y10G11A.2a protein.
Length = 111
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 66 LIRHSDMSEEMRTEAVELSVTACEKFAQNNELAARMVKESMDKKFGPAFHVVVGESYG 239
+I+ +++ E E+ ++ A + NE+A+ M K D K+G + VVG ++G
Sbjct: 33 IIQDTNLPFEQVEESKKMLGDALQLCGIENEIASFM-KRKFDAKYGGHWQCVVGRNFG 89
>Z49909-5|CAD59140.1| 594|Caenorhabditis elegans Hypothetical
protein C14A4.4b protein.
Length = 594
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 78 SDMSEEMRTEAVELSVTACEKFAQNNELAARMV 176
+++S MRT + + EKF + E AA+MV
Sbjct: 153 AEVSAAMRTFSANIGTVLAEKFRERREEAAQMV 185
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 78 SDMSEEMRTEAVELSVTACEKFAQNNELAARMV 176
+++S MRT + + EKF + E AA+MV
Sbjct: 153 AEVSAAMRTFSANIGTVLAEKFRERREEAAQMV 185
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 78 SDMSEEMRTEAVELSVTACEKFAQNNELAARMV 176
+++S MRT + + EKF + E AA+MV
Sbjct: 153 AEVSAAMRTFSANIGTVLAEKFRERREEAAQMV 185
>AL022274-2|CAA18358.1| 329|Caenorhabditis elegans Hypothetical
protein H24D24.2 protein.
Length = 329
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 442 LSREFMKVFTIIKMNRTLFDTK*TLSLNNVTETFPKYVTAYEHFHMQIAWFPPK 281
L+R+ ++V+TI + T L++V T P Y T Y+ M PPK
Sbjct: 58 LTRKSLRVYTINLFMIGIAICDFTRLLSDVFSTLPDYYTIYQVSSMPQNCIPPK 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,710,583
Number of Sequences: 27780
Number of extensions: 240692
Number of successful extensions: 758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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