Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   4.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   4.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 133 ARNSHRTMSWPREWSKSPWTRSSVLPSMLSSARVTASKS 249
           A N    ++   E+     T  + +PS++S+ R+T+ KS
Sbjct: 394 AENGVSALAGKSEYVDITVTTDASVPSLVSNVRITSVKS 432


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 166 REWSKSPWTRSSVLPS 213
           R+ S+SP+T S+++PS
Sbjct: 561 RQSSESPFTTSTIMPS 576


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 166 REWSKSPWTRSSVLPS 213
           R+ S+SP+T S+++PS
Sbjct: 561 RQSSESPFTTSTIMPS 576


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 142 SHRTMSWPREWSK 180
           SH   ++P+EWSK
Sbjct: 96  SHIQRTYPKEWSK 108


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 142 SHRTMSWPREWSK 180
           SH   ++P+EWSK
Sbjct: 96  SHIQRTYPKEWSK 108


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/27 (29%), Positives = 11/27 (40%)
 Frame = +2

Query: 272 LHVFWREPSDLHMEVLVSCNVFWKRFC 352
           L   W EPS     ++ + N     FC
Sbjct: 262 LMTLWLEPSSTERMIIANLNFILHLFC 288


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 115 STASVRISSDISECLINGYVWTTF 44
           +++ ++  SD+S C+I G ++  F
Sbjct: 3   ASSVLQAESDVSSCVIFGVLFVLF 26


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 115 STASVRISSDISECLINGYVWTTF 44
           +++ ++  SD+S C+I G ++  F
Sbjct: 3   ASSVLQAESDVSSCVIFGVLFVLF 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,177
Number of Sequences: 438
Number of extensions: 3118
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)