Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324B06f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723 31 0.74
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 29 3.0
11_01_0050 - 384860-384874,384942-385325,385426-385914,386057-38... 28 4.0
07_03_1515 - 27348999-27349559,27349738-27350070,27350461-273505... 28 4.0
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 28 4.0
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 28 4.0
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361... 28 5.2
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 27 6.9
08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058 27 6.9
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089 27 6.9
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 27 9.1
02_02_0146 - 7171656-7172044,7172383-7175008 27 9.1
01_01_1135 - 9003823-9004182,9004308-9004367,9004441-9004683,900... 27 9.1
>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
Length = 119
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 145 VAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVD 324
V Y G ++ G + F +LP + KNP +++VT P +K + + ++ V
Sbjct: 14 VNYCDWGGSSRGIRAFMEAHLPAFKEKNPHLEVVTELVRGQHPNLKGIYKNHNERVVCVR 73
Query: 325 NKSKEDIL 348
N + EDIL
Sbjct: 74 NLAPEDIL 81
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = +1
Query: 268 SPFIKCYLDDGRKILIDVDN--KSKEDILEHL 357
S I LDD KI+ID DN ++K++++E+L
Sbjct: 1914 SAVIFSLLDDSNKIMIDFDNLKQNKDELMENL 1945
>11_01_0050 -
384860-384874,384942-385325,385426-385914,386057-386233
Length = 354
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 326 LSTSIKIFLPSSR*HFMKGEGVKFFKVTICTSGFL 222
LST +++ LP R K +F++V C SGF+
Sbjct: 62 LSTYVRVVLPKLRPAIQKDSVKQFYQVYNCWSGFM 96
>07_03_1515 -
27348999-27349559,27349738-27350070,27350461-27350574,
27350911-27351141,27351231-27351686
Length = 564
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 196 FWYLPQIQYKNPDVQIVTLKNLTPSPFIK-CYLDDGRKILIDVDNKSKEDILEHLLHTVG 372
F YL +KN D V + L +PF C L R +L+D + E+ + LHT+G
Sbjct: 34 FDYLNDKIWKN-DTICVNMLRLKRAPFFCFCKLFRDRCLLVDATHMPVEEQVAMFLHTIG 92
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 265 PSPFIKCYLDDGRKILIDVDNKS 333
P+P +K YL+D +KI + DN S
Sbjct: 394 PAPLLKAYLEDSKKIPSNSDNLS 416
>01_06_1783 +
39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = -2
Query: 217 VFAVDTKSRTLLFLHYFGLLCCRLLKIS*FCLSGLASRH 101
VF V T S LLFL +F L + FCLSGL H
Sbjct: 264 VFIV-TASLVLLFLFFFKSTWSAWLLVVLFCLSGLQGLH 301
>10_01_0330 +
3614562-3614574,3614676-3615118,3617700-3617825,
3618379-3618786,3618871-3619311,3619399-3619779
Length = 603
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 295 DGRKILIDVDNKSKEDILEHLLHTVGKS 378
DG++ +++VDN E+ H LH +G +
Sbjct: 172 DGKRQIVEVDNVIDEEEYNHNLHVMGNA 199
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 196 FWYLPQIQYKNPDVQIVTLKNLTPSPFIK-CYLDDGRKILIDVDNKSKEDILEHLLHTVG 372
F YL +KN D V + L +PF C L R +L+D + E+ + LHT+G
Sbjct: 34 FDYLNDKIWKN-DTICVNMLRLKRAPFFCFCKLFRDRGMLVDTIHMPVEEQVAMFLHTIG 92
>08_01_0650 + 5617578-5618633,5619580-5619735,5619816-5620058
Length = 484
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 205 LPQIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDN 327
L ++ +Q +LK L+ IKCY+DDG L+D N
Sbjct: 189 LEDVRLLEGQIQSASLKRLS---IIKCYIDDG--FLVDAPN 224
>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
Length = 495
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 430 ANFGVGCDRSCMCEVFGQVPCS 495
A G GCDR C C V CS
Sbjct: 354 ARGGAGCDRCCACHVEESSSCS 375
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 326 LSTSIKIFLPSSR*HFMKGEGVKFFKVTICTSGFL 222
LS +++ LP R K +FF+V C SGF+
Sbjct: 62 LSKYVRVVLPKLRPAIQKDSVKQFFQVYNCWSGFM 96
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 377 DFPTVCSKCSKISSFDLLSTSIKIFLPSS 291
DFPTV CS + DL + + LPS+
Sbjct: 108 DFPTVLYNCSALQFLDLSNNELTGSLPSN 136
>01_01_1135 -
9003823-9004182,9004308-9004367,9004441-9004683,
9005207-9005305,9005807-9005986,9006090-9006164
Length = 338
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 196 FWYLPQIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKED 342
FWYLP ++ P + T K + F+ + +KI+ DV + K D
Sbjct: 212 FWYLPNVEIVKPFLDHETYKKV---KFVYSSDKESQKIMADVFDLDKLD 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,259,097
Number of Sequences: 37544
Number of extensions: 246492
Number of successful extensions: 613
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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