Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324B05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.12 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   7.7  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   7.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 429 HRLLRRGPRHSPSTPHHKRTQEPSPH 506
           H  +  G  H  +TPHH  +   +PH
Sbjct: 416 HHTMGHGHSHIHATPHHHHSHAATPH 441


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 378 SCVPDPGARLAQRAPSRHRLLRRGPRHS 461
           +C P P      R  S  R  RR PR++
Sbjct: 391 ACSPPPRQTPPSRKESGRRRRRRTPRYN 418


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 348 G*ALRSSISRSCVPDPGARLAQRAPSRHRLLRRGPRHSPSTPHHKRTQEPSP 503
           G A+ S+ + + V      L +R     +L    P H P  P      EPSP
Sbjct: 33  GNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSP 84


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +3

Query: 348 G*ALRSSISRSCVPDPGARLAQRAPSRHRLLRRGPRHSPSTPHHKRTQEPSP 503
           G A+ S+ + + V      L +R     +L    P H P  P      EPSP
Sbjct: 34  GNAIVSNSASNSVHGHREGLGRRHRYNFQLKPYNPEHKPPGPKDLVYLEPSP 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,654
Number of Sequences: 438
Number of extensions: 3187
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)