Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324B02f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 153 8e-38
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012... 151 3e-37
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 131 4e-31
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866... 29 1.7
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 28 4.0
11_01_0772 - 6455042-6458107 28 5.2
03_02_1037 - 13576316-13576503,13576727-13576818,13577043-135770... 28 5.2
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 27 6.9
06_01_0132 - 1024099-1024824 27 6.9
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 9.1
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 153 bits (371), Expect = 8e-38
Identities = 75/136 (55%), Positives = 95/136 (69%)
Frame = +3
Query: 114 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 293
+P++V+VTGAAGQI Y+++ IA G + G QPV LHLLD+ L GV MEL D AL
Sbjct: 40 KPVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAAL 99
Query: 294 PLLAGVLPTANPEEAFKDVAAAFXVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 473
PLL GV+ T++ EAFK V A +G PR++GMERKDL++ NV I+K Q AL + A
Sbjct: 100 PLLRGVVATSDEAEAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAP 159
Query: 474 DVKVLVVGNPANTNAL 521
+ KVLVV NPANTNAL
Sbjct: 160 NCKVLVVANPANTNAL 175
>10_08_0381 +
17398972-17399014,17400823-17400981,17401066-17401241,
17401565-17401842,17401938-17402073,17402183-17402294,
17402421-17402515
Length = 332
Score = 151 bits (366), Expect = 3e-37
Identities = 76/136 (55%), Positives = 92/136 (67%)
Frame = +3
Query: 114 EPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCAL 293
EP+RV+VTGAAGQI Y+L+ IA G + G QPV LH+LDI P L G+ MEL D A
Sbjct: 4 EPMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAF 63
Query: 294 PLLAGVLPTANPEEAFKDVAAAFXVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARK 473
PLL G++ T + EA V A VG PRKEGMERKD+++ NV I+K Q AL+ A
Sbjct: 64 PLLKGIVATTDVVEACTGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEAHAAP 123
Query: 474 DVKVLVVGNPANTNAL 521
+ KVLVV NPANTNAL
Sbjct: 124 NCKVLVVANPANTNAL 139
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 131 bits (316), Expect = 4e-31
Identities = 69/134 (51%), Positives = 86/134 (64%)
Frame = +3
Query: 120 IRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLEGVVMELADCALPL 299
+ V V+GAAG I+ LL+++ASG VFGP QP+ L LL + LEGV MEL D PL
Sbjct: 74 VNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAMELEDSLYPL 133
Query: 300 LAGVLPTANPEEAFKDVAAAFXVGAMPRKEGMERKDLLAANVRIFKEQGQALDKAARKDV 479
L V +P F+D A +GA PR GMER LL N +IF EQG+AL+ A ++V
Sbjct: 134 LREVSIGIDPYVVFEDAEWALLIGAKPRGPGMERSALLDINGQIFAEQGKALNSVASRNV 193
Query: 480 KVLVVGNPANTNAL 521
KV+VVGNP NTNAL
Sbjct: 194 KVIVVGNPCNTNAL 207
>08_01_0882 -
8663006-8663068,8663260-8663328,8663410-8663515,
8663889-8663944,8664163-8664222,8664310-8664529,
8664561-8664655,8664757-8664882,8664954-8665008,
8666163-8666290
Length = 325
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 96 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASGAVFGPQQPVFLHLLDIAPMMGVLE 260
G ++ E +R+ + Q Q+A GA FGP+ P L +DIA + + +
Sbjct: 187 GEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYD 241
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 333 EAFKDVAAAFXVGAMPRKEGMERKDLLA 416
EA+K + VGAM R G RK LLA
Sbjct: 146 EAYKAIDKTVKVGAMHRNTGNHRKSLLA 173
>11_01_0772 - 6455042-6458107
Length = 1021
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -1
Query: 302 QKWQSTVGQLHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK*VCNLSGSTSYNNS 123
+K ST+ ++ + HR ++ V D L R CS +++++ ++S + + +
Sbjct: 564 KKGDSTLEEVAEGYLMELVHRNMLQLVYNDELGRVSTCSMHDILRELALSISKAELFGTA 623
Query: 122 YRFS 111
FS
Sbjct: 624 NNFS 627
>03_02_1037 -
13576316-13576503,13576727-13576818,13577043-13577082,
13577578-13577807,13577906-13578030,13578142-13578291
Length = 274
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 372 AMPRKEGMERKDLLAANVRIFKEQG-QALDKAARKDVKVLVVGNP 503
A+ E M K++ A+ + +E+ Q L +AA DV LVVG+P
Sbjct: 46 ALSNLEKMYGKEITVADREMVEERADQMLREAADADVAFLVVGDP 90
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 275 LHDNTFKYTHHRRNIKKVEEDRLLRSKNCSRRNLIKK 165
LH+N +H KK+ E R L + +C R NL+++
Sbjct: 46 LHNNQPYAAYHILKGKKLPESRYLFAMSCFRMNLLRE 82
>06_01_0132 - 1024099-1024824
Length = 241
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 96 GNIKMAEPIRVVVTGAAGQIAYSLLYQIASG-AVFGPQQPVFL---HLLDIA 239
GN+ A +R TG GQI Y+ + + +G + P P + LLD+A
Sbjct: 76 GNLTFAFTVRAANTGGFGQIYYTNIKALLAGRSASSPASPTYFVKTGLLDMA 127
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 431 LQRARPGFGQSGS*RCEGPCCWQPS 505
LQRA PG + S R P C QP+
Sbjct: 273 LQRATPGAAGTSSPRSTAPACQQPA 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,423
Number of Sequences: 37544
Number of extensions: 267138
Number of successful extensions: 766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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