Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS324B01f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 75 2e-14
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 30 1.2
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 30 1.2
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 30 1.2
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ... 30 1.2
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ... 30 1.2
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ... 30 1.2
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ... 30 1.2
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ... 30 1.2
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 29 2.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 29 2.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 29 2.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 29 2.7
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 29 2.7
L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 28 3.5
Z79753-4|CAB02084.2| 396|Caenorhabditis elegans Hypothetical pr... 28 3.5
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 28 3.5
AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical... 28 4.7
AF098987-5|ABD63222.1| 263|Caenorhabditis elegans Hypothetical ... 27 6.2
AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical ... 27 6.2
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 27 8.1
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 75.4 bits (177), Expect = 2e-14
Identities = 52/152 (34%), Positives = 71/152 (46%), Gaps = 8/152 (5%)
Frame = +1
Query: 70 CELNPGPGVGSKSPGDNHYRLIVNGEVER-------YAPDQRYVVTLVGSRTHDVVQQFA 228
C + P G KSPG N Y + +NG + + P + Y V++ G RT V+ F
Sbjct: 27 CTIKPYEAKGDKSPGSNGYVIEINGTTTKSMDISKGFVPGEIYKVSIRGWRTQYTVKTFR 86
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLP-KTEVQVMWKAP 405
GF ++ L D A S Q + D + C S V +L KT V +MWKAP
Sbjct: 87 GF--VVSSLFEDNTSAGSWQ-VVKGHGDA--RISPGCRQSGVSHANLKSKTSVHMMWKAP 141
Query: 406 PAGSGCVLLKAMVYENASRWFAEDGQLTKRIC 501
SGCV+ +A V E WF E LT ++C
Sbjct: 142 EVSSGCVVFRASVIETKYIWFTEAEGLTVKLC 173
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform g protein.
Length = 1769
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform f protein.
Length = 1769
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform e protein.
Length = 1769
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform d protein.
Length = 1769
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
protein 1, isoform c protein.
Length = 1769
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/121 (24%), Positives = 48/121 (39%)
Frame = +1
Query: 49 LVSAALACELNPGPGVGSKSPGDNHYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFA 228
+V +A+ + VGS S R+ E + P + ++ V FA
Sbjct: 509 IVESAVTVTCSHEEDVGSHSSLQTVRRIQEMQEEDEVDPIKPFIEATSPKVKESVEHPFA 568
Query: 229 GFKIILDPLNPDTRRAPSKQGQFQLFADTLTKFDEECTNSVVEADDLPKTEVQVMWKAPP 408
IL+P + R +PS +G+ LFA +T E +++ L K V PP
Sbjct: 569 N---ILNPKKREERLSPSGKGKHLLFAPRITAHPSESVFKILDGSPL-KLRVMAS-SLPP 623
Query: 409 A 411
A
Sbjct: 624 A 624
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 274 APSKQGQFQLFADTLTK--FDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVY 447
A + + F TL K FD+ + E D K V + WK PPA G ++ V
Sbjct: 2618 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWK-PPANDGGAPIEEYVV 2676
Query: 448 E 450
E
Sbjct: 2677 E 2677
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 274 APSKQGQFQLFADTLTK--FDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVY 447
A + + F TL K FD+ + E D K V + WK PPA G ++ V
Sbjct: 3147 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWK-PPANDGGAPIEEYVV 3205
Query: 448 E 450
E
Sbjct: 3206 E 3206
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 274 APSKQGQFQLFADTLTK--FDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVY 447
A + + F TL K FD+ + E D K V + WK PPA G ++ V
Sbjct: 2828 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWK-PPANDGGAPIEEYVV 2886
Query: 448 E 450
E
Sbjct: 2887 E 2887
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 274 APSKQGQFQLFADTLTK--FDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVY 447
A + + F TL K FD+ + E D K V + WK PPA G ++ V
Sbjct: 2618 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWK-PPANDGGAPIEEYVV 2676
Query: 448 E 450
E
Sbjct: 2677 E 2677
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 274 APSKQGQFQLFADTLTK--FDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVY 447
A + + F TL K FD+ + E D K V + WK PPA G ++ V
Sbjct: 3147 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWK-PPANDGGAPIEEYVV 3205
Query: 448 E 450
E
Sbjct: 3206 E 3206
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 274 APSKQGQFQLFADTLTK--FDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVY 447
A + + F TL K FD+ + E D K V + WK PPA G ++ V
Sbjct: 2828 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWK-PPANDGGAPIEEYVV 2886
Query: 448 E 450
E
Sbjct: 2887 E 2887
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +1
Query: 274 APSKQGQFQLFADTLTK--FDEECTNSVVEADDLPKTEVQVMWKAPPAGSGCVLLKAMVY 447
A + + F TL K FD+ + E D K V + WK PPA G ++ V
Sbjct: 2037 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWK-PPANDGGAPIEEYVV 2095
Query: 448 E 450
E
Sbjct: 2096 E 2096
>L15314-2|AAF99983.1| 322|Caenorhabditis elegans Hypothetical
protein K06H7.7 protein.
Length = 322
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 166 PAHIAQLLR*QSACSDC----LQVTLNLLQDLDLARRPVP 59
P H ++L+ +C DC L V + L LDL+ P+P
Sbjct: 170 PGHFVEMLKEDCSCRDCGSADLAVKVRLTVPLDLSDIPIP 209
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 250 PLNPDTRRAPSKQGQFQLFA-DTLTKFDEECTNSVVEADDLPKTE 381
PL+ DT++ SK + +L D DEECTN A +L +TE
Sbjct: 188 PLD-DTQKLKSKSERNRLIREDENDDSDEECTNKFYSARELLRTE 231
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 250 PLNPDTRRAPSKQGQFQLFA-DTLTKFDEECTNSVVEADDLPKTE 381
PL+ DT++ SK + +L D DEECTN A +L +TE
Sbjct: 188 PLD-DTQKLKSKSERNRLIREDENDDSDEECTNKFYSARELLRTE 231
>Z79753-4|CAB02084.2| 396|Caenorhabditis elegans Hypothetical
protein F20G2.4 protein.
Length = 396
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/76 (23%), Positives = 35/76 (46%)
Frame = -1
Query: 443 TIAFKSTHPEPAGGAFHMTWTSVLGRSSASTTEFVHSSSNLVKVSAKSWNCPCLLGALLV 264
TI+F + PEP F+ T+ + G ++++ + N++ + +WN + +
Sbjct: 284 TISF-NYKPEPVSDGFYSTFVYITGEANSTIEITMEGLENVICTAGCTWN------GVEI 336
Query: 263 SGFKGSRIILKPANCC 216
+ SR I P CC
Sbjct: 337 KSREDSR-ITSPVMCC 351
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 226 QTVVLRHECGNRPESRHISDPAHIAQLLR*QSACSD 119
+ + L HECG R +S H++ AH LR +D
Sbjct: 448 RAIYLLHECGQRVDSVHVAVLAHKLGYLRMSKKSTD 483
>AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical
protein F41G4.8 protein.
Length = 242
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 40 WLGLVSAALACELNPGPGVGSKSPGDNHY--RLIVNGEVERYAPDQRYVVT 186
+L L+SAA++C+ G G ++ D ++ RLI N + Y + Y +T
Sbjct: 5 FLYLLSAAVSCQFQDFEGSGEEALIDEYWLQRLIENVGIPHYLTQKAYQLT 55
>AF098987-5|ABD63222.1| 263|Caenorhabditis elegans Hypothetical
protein F40H3.1b protein.
Length = 263
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 96 RFKVTWRQSLQADC*RRS*AICAGSEICR 182
R K+ WRQS+ +C +S A CA E C+
Sbjct: 201 RSKIRWRQSVCEEC--KSVAECANCEECK 227
>AF098987-4|AAC67429.1| 496|Caenorhabditis elegans Hypothetical
protein F40H3.1a protein.
Length = 496
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 96 RFKVTWRQSLQADC*RRS*AICAGSEICR 182
R K+ WRQS+ +C +S A CA E C+
Sbjct: 434 RSKIRWRQSVCEEC--KSVAECANCEECK 460
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
protein T19A5.1 protein.
Length = 1280
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 121 HYRLIVNGEVERYAPDQRYVVTLVGSRTHDVVQQFAGFKII 243
H+++ +G+ + PD RY + L GS T D + Q K++
Sbjct: 25 HWKISEDGKKIQAVPDTRYHLKLPGSLT-DFITQVENVKVV 64
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical protein
C16A3.7 protein.
Length = 1119
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 410 AGGAFHMTWTSVLGRSSASTTEFVHSSSNLVKVSAKSWNCP 288
+G A+H T+ + L S FVH +N ++++S + P
Sbjct: 886 SGEAYHDTFRAHLPAMSIEKRRFVHEYANFFNIASESVDSP 926
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,048
Number of Sequences: 27780
Number of extensions: 268510
Number of successful extensions: 753
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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