Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324A11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    28   0.73 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   3.9  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   3.9  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    26   3.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   5.2  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   6.8  
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    25   6.8  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   9.0  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   9.0  

>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +1

Query: 115 YYNKIISLVEMNTKCTEKTAITLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSN 294
           Y N I S+ E     T+ +A+  K+ F+  + AS+ Y++ +    L  SG+     L + 
Sbjct: 454 YLNNIWSVFEYKDPSTKLSALIPKYFFSELNIASICYEISSGLAFLHNSGI-AHHNLTTE 512

Query: 295 VLYIEFKSLDLK 330
            +Y+  KS  LK
Sbjct: 513 CIYLT-KSSCLK 523


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 274 LYVHHFLLIPCQHLVHR 224
           L+   F+L PCQH  HR
Sbjct: 844 LFSEPFVLFPCQHAFHR 860


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
            Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 115  YYNKIISLVEMNTKCTEKTAITLKFSFTSNDNASLVYDVLNVDKELKGSG 264
            + +KI  LVE      + +  T  +  +  +N  L+Y++  VD    G G
Sbjct: 883  FRDKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKLIYELYAVDNHYGGLG 932


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 445 PSRSLYGFFLYLFSKTTLTMFCIWA 519
           P+   YGF +YL S     ++ +WA
Sbjct: 5   PTYEYYGFVMYLVSMLGFGVYIVWA 29


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 386  VFVIRSIFFRIAFTATLRRFKSKLLNSM*RTLD 288
            + V   + F+  ++A+LRR +SKL+ S+   L+
Sbjct: 1007 LLVTEILEFQALYSASLRRMRSKLIKSLLHLLE 1039


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 360  KKYTSYHKNCGKLSNKITSNA*THTST 440
            KK+T YHK    +S+K+ S   T   T
Sbjct: 1035 KKFTDYHKFLENISDKLKSEEDTSLET 1061


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 208 NASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRL 336
           N  LV DVL+    +K SG  RE        Y++ KSL +  L
Sbjct: 456 NTGLVSDVLSPFGGVKESGFGREGSKYGISEYLDIKSLTISTL 498


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 376 ITKTVENLATK*PAMPEHTPAPTPSRSLYG 465
           I  + E+L+ K PA+    P+ + SRS +G
Sbjct: 541 INNSTEDLSKKHPALHSSRPSDSRSRSKFG 570


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 427 HTPAPTPSRSLYGFFLYLFSKTTLTMFCIWA 519
           HT A T    + GF L+L S+T L     WA
Sbjct: 81  HTKAVTKGLKI-GFMLFLISETFLFASIFWA 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,191
Number of Sequences: 5004
Number of extensions: 38093
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)