Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324A11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510...    50   1e-06
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703...    50   1e-06
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888     31   0.74 
07_03_1541 + 27575006-27575089,27575361-27575460,27575643-275757...    28   4.0  
12_02_0387 + 18453328-18453456,18453699-18453836,18454085-184541...    28   5.2  
12_01_1034 - 10638984-10639376,10639905-10640093                       27   6.9  

>08_02_1388 +
           26649874-26649905,26650243-26650365,26650980-26651013,
           26651792-26651893,26652174-26652241,26652518-26652571,
           26653139-26653211,26653428-26653537,26653615-26653719,
           26653842-26653941,26653979-26654088,26656234-26656306,
           26656429-26656484,26656576-26656702
          Length = 388

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/70 (34%), Positives = 41/70 (58%)
 Frame = +1

Query: 184 KFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILK 363
           +  + S + AS+VY  L VDKEL+   V RE  +    L + F++++ + LR + +A + 
Sbjct: 307 EIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVD 366

Query: 364 NILLITKTVE 393
             +L+TK VE
Sbjct: 367 LTVLVTKLVE 376


>02_02_0595 +
           11968298-11968329,11969405-11969438,11970216-11970317,
           11970598-11970665,11970942-11970995,11971563-11971635,
           11971852-11971961,11972039-11972143,11972266-11972365,
           11972403-11972512,11974664-11974736,11974859-11974914,
           11975006-11975132
          Length = 347

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/70 (34%), Positives = 41/70 (58%)
 Frame = +1

Query: 184 KFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILK 363
           +  + S + AS+VY  L VDKEL+   V RE  +    L + F++++ + LR + +A + 
Sbjct: 266 EIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVD 325

Query: 364 NILLITKTVE 393
             +L+TK VE
Sbjct: 326 LTVLVTKLVE 335


>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
          Length = 748

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 145 MNTKCTEKTAITLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKS 291
           +N K  + TA   +  FT     SL Y+V  + KEL+     REF LKS
Sbjct: 82  LNQKLIDATA---RLEFTHKQCGSLQYEVRILQKELEIRNKEREFDLKS 127


>07_03_1541 +
           27575006-27575089,27575361-27575460,27575643-27575782,
           27575948-27576163
          Length = 179

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 226 DVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILKNILLI 378
           DV   D+ LKGS +   F LK    ++   SLD   L+  +  I+  ILL+
Sbjct: 88  DVPASDRALKGSSLFGMFALKERPRWMRISSLD--ELKTKLGHIIVMILLV 136


>12_02_0387 +
           18453328-18453456,18453699-18453836,18454085-18454144,
           18461532-18462591,18463022-18463521
          Length = 628

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 364 NILLITKTVENLATK*PAMPEHTPAPTP 447
           ++ +I + V ++ T+    P+HTP PTP
Sbjct: 579 DLAMINRAVHSVETRPYERPKHTPKPTP 606


>12_01_1034 - 10638984-10639376,10639905-10640093
          Length = 193

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 73  VLRISKISKHNL*TYYNKIISLVEMNTKCTEKTAITLKFS 192
           VL  +K  KH   TY +KI +  ++N   TEK  + + F+
Sbjct: 12  VLGQTKDKKHLAITYASKIFTRAQLNYATTEKELLAIVFA 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,430,744
Number of Sequences: 37544
Number of extensions: 198249
Number of successful extensions: 508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)