Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324A11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    41   5e-04
Z34801-5|CAA84326.1|  123|Caenorhabditis elegans Hypothetical pr...    37   0.010
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    29   2.7  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    29   2.7  
AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U97551-3|AAB52860.2|  215|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   8.1  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 412 PAMPEHTPAPTPSRSLYGFFLYLFSKTTLTMFCIWA 519
           P+   H P P P+R +YGF LY+ S T   ++ IWA
Sbjct: 19  PSEEIHLPGPHPARGIYGFALYIVSWTLFVIYLIWA 54


>Z34801-5|CAA84326.1|  123|Caenorhabditis elegans Hypothetical
           protein F59A2.5 protein.
          Length = 123

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 21/72 (29%), Positives = 38/72 (52%)
 Frame = +1

Query: 178 TLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAI 357
           +++ S  + + A  V DV+ +DKE + SG  RE   +   + I+ +S D K L  ++   
Sbjct: 29  SVRLSVGTEEAARTVADVIKIDKEPRRSGARREVCSEGEFVVIKIESKDPKSLSKSIANA 88

Query: 358 LKNILLITKTVE 393
           +  I L  KT++
Sbjct: 89  VDMIDLSVKTIK 100


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform a protein.
          Length = 1212

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 211  HYHWT*MRILEL*LFFPYISCSFRLMILFYYSMFKG 104
            H HW+  R+    L+F Y + +  + I+FYY  + G
Sbjct: 983  HGHWSYYRLANTFLYFLYKNAN-AVFIIFYYQFYNG 1017


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 211  HYHWT*MRILEL*LFFPYISCSFRLMILFYYSMFKG 104
            H HW+  R+    L+F Y + +  + I+FYY  + G
Sbjct: 983  HGHWSYYRLANTFLYFLYKNAN-AVFIIFYYQFYNG 1017


>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 447 WCRCWCVFRHCWLF 406
           +CRC CV+R  WLF
Sbjct: 14  FCRCLCVYRCLWLF 27


>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 211  HYHWT*MRILEL*LFFPYISCSFRLMILFYYSMFKG 104
            H HW   R+ +  L+F Y + +  + ++F+Y +F G
Sbjct: 1051 HGHWNYYRLAQTILYFFYKN-AMLVFVIFWYQIFNG 1085


>U97551-3|AAB52860.2|  215|Caenorhabditis elegans Hypothetical
           protein T01B10.5 protein.
          Length = 215

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 419 IAGYFVAKFST--VFVIRSIFFRIAFTATLRRFKSK 318
           + GYF+    T  VFVI  I F I+  ATLR+   K
Sbjct: 125 VNGYFMGFVCTLFVFVIAMILFTISRFATLRKLMKK 160


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 211 ASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFK 315
           ++L+Y + N +KE+    + +E  L S  LY  FK
Sbjct: 3   SNLIYKINNNEKEVWKEDIEKELMLYSEKLYKAFK 37


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 129 YFIIVCLKVMFTDFTDT*YVFRLIIFVYSL 40
           +FIIVC+  +   F+ T  V RL+ F+++L
Sbjct: 220 FFIIVCILSVIFSFSATPNVQRLLKFIFNL 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,290
Number of Sequences: 27780
Number of extensions: 209644
Number of successful extensions: 534
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)