Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS324A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 53  NIIKRKTYYVSVKSVNITFKH 115
           +I+  K YY+S   +++ F H
Sbjct: 180 SILAIKVYYISCPEISVNFAH 200


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 440 RHHQDLYMASF 472
           RHH DLY  S+
Sbjct: 774 RHHDDLYSQSY 784


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 431 VCSGIAGYFVAKFSTVFVIRSIFFRIAFTATLRRFKSKLLN 309
           VC GI  YFV  F  ++    I   +A      R ++K +N
Sbjct: 218 VCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMN 258


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +2

Query: 41  KLYTNIIKRKTYYVSVKSVNITFKHTIIK 127
           K +   +    + ++  +  +T+KHTII+
Sbjct: 47  KYFEQTLNELNFNLNYVNKGVTYKHTIIE 75


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   ITYKSRYLIIISC 47
           + YK R L+++SC
Sbjct: 90  VGYKGRALVVVSC 102


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 9   ITYKSRYLIIISC 47
           + YK R L+++SC
Sbjct: 90  VGYKGRALVVVSC 102


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -1

Query: 440 GAGVCSGIAGYFVAKFSTVFVIRSIFFRIAFTATL 336
           G  +   +A  F+A+ + + +       ++FTATL
Sbjct: 399 GTALYEAVAAIFIAQMNGISLGIGEVITVSFTATL 433


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 431 VCSGIAGYFVAKFSTVFVIRSIFFRIAFTATLRRFKSKLLN 309
           VC GI  YFV  F  ++    I   +A      R ++K +N
Sbjct: 94  VCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMN 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,473
Number of Sequences: 438
Number of extensions: 2624
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)