Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   0.42 
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    28   0.97 
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   3.0  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.8  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +3

Query: 33  KIMSLVIKQGNCCLIDHWEFIAKLYKD----VLFEENYQSYTLSAKL--FSITSEVRTRK 194
           K+ +L   Q +   I HW    K Y D    +  E  Y+S +    L  + +   V+  +
Sbjct: 11  KLATLNETQESITGIAHWVMFHKRYADEIVQIWLEALYESSSNKKLLLLYLLNEVVQQSR 70

Query: 195 RKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYNI 314
            KK+ E +   +  +     +  A VP SIK +I   +++
Sbjct: 71  VKKISEYIDAVSPYVVNSVADAYASVPASIKTKIKYVFDV 110


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 15/68 (22%), Positives = 35/68 (51%)
 Frame = +3

Query: 165 SITSEVRTRKRKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYNILDTSSVRDFX 344
           S+ + + TRKR+     L ++ + I   +EEF+ K+   I  +   K ++   ++ R   
Sbjct: 39  SVKNALATRKRE--CRALYVQNADIHSEFEEFLNKLQYKIPIKSVNKEHLNQITACRPHN 96

Query: 345 GIIISVNN 368
           G+++  ++
Sbjct: 97  GVVLEASS 104


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 210 EELSIETSKIKRMYEEFIAKVPNSIKERISQKY 308
           EE + + + I+  YE+ IAKVP  +++   ++Y
Sbjct: 329 EESAGDINTIRETYEKAIAKVPEVVEKNAWRRY 361


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 314  NIVFL*NSLFYRIWYFCYKFFIHSFNLGSL--YT*FLVNFFSFPSTNF 177
            N+VF   +LF+  W++  KF+ H  + G    Y   L  FF    + F
Sbjct: 1308 NLVF--GTLFFLCWFYPIKFYKHIHHPGDKTGYAWLLYMFFQMYFSTF 1353


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +3

Query: 288 ERISQKYNILDTSSVRDFXGIIISVNNF*SSQYKRW*HVRYTGKMXNTK 434
           ERI  +Y I  T         I++ +N  S  ++RW ++R  G + N +
Sbjct: 417 ERIMNRYGIPMTIDTFLLMQFILAKSNRWSEVWRRWDNLRKAGVVFNER 465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,920,263
Number of Sequences: 5004
Number of extensions: 36885
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)