Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330     30   1.3  
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062...    29   2.3  
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    28   5.2  

>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
          Length = 564

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 189 RKRKKVYEELSIETSKIKRMYEEFIAKVPNSIKERISQKYN 311
           R+ K   EE ++   K K +Y+E  AK+ + ++ER+ Q  N
Sbjct: 375 RRSKGECEETNVAQLK-KEIYDELAAKIDSEVEERLQQALN 414


>04_04_0294 +
           24204563-24204748,24205531-24205620,24205980-24206211,
           24207180-24207457,24207576-24207647,24208054-24208295,
           24208781-24209197,24209296-24209497,24209624-24209738,
           24209821-24209906,24210235-24210354,24210431-24210519,
           24210588-24210669,24211072-24211263,24211546-24211668
          Length = 841

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = +3

Query: 42  SLVIKQGNCCLIDHW--EFIAKLYKDVLFEENYQSYTLSAKLFSITS-EVRTRKRKKVYE 212
           S  +++   C+ ++W  + ++K  +D+  E+NYQ   + A + S+ S E R+  RK   +
Sbjct: 83  SSAVERIKFCVQENWPEDILSKALEDICLEKNYQEKCVLALVHSLQSYEDRSPHRKS--K 140

Query: 213 ELSIETSKIKRMYEEFIAKV 272
            L   +S + R Y+  ++ V
Sbjct: 141 ALDCSSSLMPR-YQLMVSSV 159


>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
            579266-579370,579975-580028,580244-580344,580454-581423,
            582030-582203,582341-582643,582719-582856,582993-583247,
            584230-584370,585008-585289,585395-585540,585627-585690,
            585723-585799,586285-586301,587728-587867,587972-588029,
            588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 165  SITSEVRTRKRKKVYEELSIETSKIKRMYEEFIAK 269
            ++ S+V  +KRK++  E + E  K+K+ Y+  + K
Sbjct: 2334 NVLSKVHEQKRKQLLVEYNQEMEKLKQKYDSLLQK 2368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,559,981
Number of Sequences: 37544
Number of extensions: 172013
Number of successful extensions: 352
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)