Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.62 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.9  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 313 FWIHRQ*ETFXASLFQSTIFDHHSINGGSTSDIP-VKXKIXNXYFLI 450
           FWIHR+  +    L  +T+    +I+  S +D+P V+      +FL+
Sbjct: 266 FWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLL 312


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 145 RYQPNSFRLLLK 180
           RY PNS R+LLK
Sbjct: 808 RYLPNSLRILLK 819


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 12  CVSNKRRKIMSLVIKQGNCCLIDHWEF 92
           CV N + +   L  ++ + C+ID+ +F
Sbjct: 101 CVDNAKNEDKCLTAQKFSRCVIDYVKF 127


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 216 LSIETSKIKRMYEEFIAKVPNS 281
           L+ E S    +YE F A+ PNS
Sbjct: 352 LATEASYDYSLYEIFPARAPNS 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,880
Number of Sequences: 438
Number of extensions: 2737
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)