Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    29   0.56 
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   1.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   2.2  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   2.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   3.0  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    25   6.8  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   6.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   9.0  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.0  

>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 254  FLNRFSIMLVFWWEDLSFCICYPFFKIF 171
            FL RFS+     W +L   + Y FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 183 EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 284
           +++   + ++FP   Q D E I +L  DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 118 WLCTHHFLLDCSFFSTNQNILKNG*QIQKDKSSHQKTNMIEKRF 249
           WLCT    L C+  S   +I+      +  KSS  KTN++   F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 329 NYIIYKLGSLGFQTLHLFLPHILY*FLNRFSIMLVF 222
           N +I   G  G +T   ++ H+L+  LNR ++ L++
Sbjct: 536 NLLILCKGFEGLETFFAYIVHLLHGVLNRNNVKLIY 571


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 228  QHDREAIQKLIQDMRKKQMQSLESK*TKF 314
            Q   E +  +IQDM KKQ    +S  T+F
Sbjct: 960  QRTNEVLLPVIQDMHKKQFVGTQSNLTQF 988


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 297 IPDFAFVSSSYPVLIFESLLYHVG 226
           IP+   +S +YP LIFE+L   +G
Sbjct: 174 IPNTGTMSEAYPHLIFENLTSKLG 197


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 280 CFFLISCINF*IASLSCWFSGGKICLFVFVTHSSKYF 170
           CF+L+  I   IA L   +  G + LF+F      YF
Sbjct: 210 CFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYF 246


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 416 GYRAPPRVFF--FFFLIKVHNVFNNV*QQKLNY 324
           G+++P   F+  FFF++ VH V  ++ + K  Y
Sbjct: 401 GFQSPLPYFYPCFFFVVLVHRVSRDIKKCKAKY 433


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 6/27 (22%), Positives = 15/27 (55%)
 Frame = -1

Query: 242 FSIMLVFWWEDLSFCICYPFFKIFWLV 162
           +++ +  WW   +  +C   F +FW++
Sbjct: 76  YALRVPNWWPCKTTVVCLILFLLFWII 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,688
Number of Sequences: 5004
Number of extensions: 44127
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)