Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   0.98 
02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270...    29   3.0  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   6.9  
02_04_0391 + 22576839-22577387                                         27   6.9  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     27   9.1  
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960...    27   9.1  
04_04_0845 - 28646547-28646637,28646724-28646854,28647832-286479...    27   9.1  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 440 ITIHWPSFYNVV-TGKTLALPNLIALQH 520
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>02_05_0287 -
           27525722-27525812,27525927-27526057,27526945-27527022,
           27527080-27527186,27527302-27527380,27528001-27528096,
           27528192-27528443,27528691-27528840,27528953-27529277,
           27529373-27529584
          Length = 506

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 227
           VGR  + T+ P   ++ F Q  K FE W  +T  +IF  +N
Sbjct: 81  VGRPVVVTADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 121


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 452 WPSFYNVV-TGKTLALPNLIALQH 520
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>02_04_0391 + 22576839-22577387
          Length = 182

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 159 FNQPKYFEEWVTNTKRQIFPPENQHDREAI 248
           FN+ K+ E   TN   Q+  P N+H+++ +
Sbjct: 47  FNKQKHVEIQPTNKLEQLIQPTNEHEQQQL 76


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 452 WPSFYNVV-TGKTLALPNLIALQH 520
           W  F N+V +G TL+LP  + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437


>04_04_1371 +
           32995337-32995358,32995745-32995822,32995876-32996019,
           32997595-32997930,32998014-32998166,32998286-32998501,
           32998600-33000695
          Length = 1014

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 276 KQMQSLESK*TKFINNII*FLLSNVIKYIMYFNXXXXXXNSRGGPVPNSPYSEVVLQFTG 455
           + ++ L      F  NI  FLLS     + +        N+  GP+P +P S + L   G
Sbjct: 322 RNLRELHLSSNNFTGNISTFLLS-----LPHIERLDLSGNTFEGPIPITPSSNLSLSLKG 376

Query: 456 RRFT 467
            RF+
Sbjct: 377 LRFS 380


>04_04_0845 -
           28646547-28646637,28646724-28646854,28647832-28647938,
           28648043-28648121,28648578-28648667,28648814-28649065,
           28649367-28649519,28649631-28649955,28650069-28650283
          Length = 480

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 VGRMAMYTSFPVGLFFFFNQP-KYFEEWVTNTKRQIFPPEN 227
           VGR  + ++ P   ++ F Q  K FE W  +T  +IF  +N
Sbjct: 82  VGRPVVVSADPEMNYYVFQQEGKLFESWYPDTFTEIFGRDN 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,210,893
Number of Sequences: 37544
Number of extensions: 250446
Number of successful extensions: 520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)