Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical...    50   8e-07
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    30   1.2  
U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine rece...    29   2.0  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   2.7  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   2.7  
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine re...    28   4.7  
Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL132949-12|CAB70105.1|   90|Caenorhabditis elegans Hypothetical
           protein Y53F4B.14 protein.
          Length = 90

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 23/68 (33%), Positives = 39/68 (57%)
 Frame = +3

Query: 87  MGNWKLEVGRMAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQD 266
           MG WKLE GR  +  +FPVG F+ FNQP  F+E++   +       ++   E  ++L+  
Sbjct: 1   MGGWKLETGRFLLLITFPVGAFWLFNQPTIFKEFMRGYRIPDSSAGDKAMAEFKEQLLAT 60

Query: 267 MRKKQMQS 290
            RK++ ++
Sbjct: 61  KRKEEYEN 68


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 297 IPDFAFVSSSYPVLIFESLLYHVGFLV--GRFVFLYLLPILQNI 172
           + + AF+   YP L+F+++ Y +GFL+   RF+ +Y  P+   I
Sbjct: 77  VKNLAFILI-YPFLVFDTMRYTLGFLITFDRFIAIY-FPVFYQI 118


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 171 KYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 302
           K  ++++TN  ++I   E ++++  IQKLIQ+  +     L+ K
Sbjct: 218 KSMQQYITNENKRIAREEMKNEKNRIQKLIQEDEEGYRAMLDEK 261


>U13072-3|AAK31396.4|  326|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 3 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -1

Query: 401 PRVFFFFFLIKVHNVFNNV*QQKLNYIIYK-LGSLGFQTLHLFLPHILY*FLNRFSIMLV 225
           P V F  + +  H VF+N  Q  +   + + L  L  +++ +FL        N     LV
Sbjct: 37  PMVIFLGYQLFQHRVFHNNLQNLVKAAVVEYLVQLTARSIQIFL------IFNSAEDGLV 90

Query: 224 FWWEDLSFCICYPFFKIFWL 165
           F++  L+ C CY FF  F L
Sbjct: 91  FYYASLARCTCY-FFVSFSL 109


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 434 FTIGRIGYRAPPRVFFFFF 378
           + IG  G+ APP VF FFF
Sbjct: 346 YVIGAFGHEAPPLVFKFFF 364


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 434 FTIGRIGYRAPPRVFFFFF 378
           + IG  G+ APP VF FFF
Sbjct: 344 YVIGAFGHEAPPLVFKFFF 362


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = +3

Query: 159 FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 302
           FN+ +  ++   +  + ++  E+ H +   + +I+D  +K  + LE K
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEK 794


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = +3

Query: 159 FNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK 302
           FN+ +  ++   +  + ++  E+ H +   + +I+D  +K  + LE K
Sbjct: 747 FNESEAIKQRTISNLKGLYEDESTHQKRKYETMIEDQIRKSFRQLEEK 794


>Z74038-2|CAE48502.1|  611|Caenorhabditis elegans Hypothetical
           protein F58B4.1b protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 138 PVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDRE 242
           P G  FF N    F  W TN  +  +P  N ++ +
Sbjct: 571 PFGSNFFNNNYNSFNNWYTNKNKNYYPYSNSNNNK 605


>AF016435-4|AAB65880.2|  330|Caenorhabditis elegans Serpentine
           receptor, class w protein8 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 116 DGYVHIISCWIVLFFQPTKIF*RMGNKYKKTNLPTRKPT 232
           DGY+ ++ C++ +    T IF     K ++ NL   K T
Sbjct: 222 DGYIAMVVCFLYIIVAGTLIFQLQKAKQRRKNLKAEKST 260


>Z50872-2|CAA90755.1|  273|Caenorhabditis elegans Hypothetical
           protein C05D12.4 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 117 MAMYTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQ-MQSL 293
           + M T++ +  F F +     E WVTN K  +   +++   E ++K    ++ KQ  Q L
Sbjct: 196 LKMQTNW-IDTFLFEHSKMISEVWVTNQKMAVQSKQSEDQLEVLKKKKDVLKAKQAAQEL 254

Query: 294 E 296
           E
Sbjct: 255 E 255


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 142 LDCSFFSTNQNILKNG*QIQKDKSSHQKTNMIEKRFKN 255
           + CSF  + + IL+     + DK +H K N  ++ FKN
Sbjct: 18  VSCSFTKSGKQILQQ--IFEGDKDNHTKFNKFQELFKN 53


>Z48009-5|CAA88086.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.7 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 309 WFTWIPDFAFVSSSYPVLIFESLLY 235
           W  W+    F+++S+P+L+   + Y
Sbjct: 274 WVVWVYTIPFIAASFPILLIYRIRY 298


>AF026215-7|ABR92608.1|  554|Caenorhabditis elegans Hypothetical
           protein F09G2.8b protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 180 EEWVTNTKRQIFPPENQHDREAIQKLIQDMRK 275
           E +++++     P   +HD  AIQK+++D RK
Sbjct: 365 EYFISSSPGPFNPKGREHDLAAIQKIMKDARK 396


>AF026215-6|AAB71325.1|  516|Caenorhabditis elegans Hypothetical
           protein F09G2.8 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 180 EEWVTNTKRQIFPPENQHDREAIQKLIQDMRK 275
           E +++++     P   +HD  AIQK+++D RK
Sbjct: 327 EYFISSSPGPFNPKGREHDLAAIQKIMKDARK 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,852,425
Number of Sequences: 27780
Number of extensions: 243840
Number of successful extensions: 619
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)