Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 425 WKQKNLTLALXXXXXXXXMYLTQKQTLVLSQLYVMPFL 312
           W  KNLT A          YL+ +  + L+ +Y++ F+
Sbjct: 15  WDLKNLTEAEYLAKVLGPKYLSMRMVIPLTIIYMIIFV 52


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 369 HFLHSHHHLQCQGQIFLFP 425
           + +  H  L CQG++ +FP
Sbjct: 176 YLMRRHLILSCQGRLNIFP 194


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 369 HFLHSHHHLQCQGQIFLFP 425
           + +  H  L CQG++ +FP
Sbjct: 176 YLMRRHLILSCQGRLNIFP 194


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 369 HFLHSHHHLQCQGQIFLFP 425
           + +  H  L CQG++ +FP
Sbjct: 227 YLMRRHLILSCQGRLNIFP 245


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 369 HFLHSHHHLQCQGQIFLFP 425
           + +  H  L CQG++ +FP
Sbjct: 176 YLMRRHLILSCQGRLNIFP 194


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 63  PSLILLFLQGHHHQHPKDS 119
           P+ I +    HHH HP ++
Sbjct: 454 PAAIQIGHTPHHHPHPPET 472


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 276 HHHQKTH 296
           HHHQ TH
Sbjct: 815 HHHQSTH 821


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,548
Number of Sequences: 438
Number of extensions: 2997
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)