Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323H05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 1.7
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 27 1.7
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 3.0
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 26 3.0
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera... 25 5.2
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 5.2
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.0
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 9.0
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.0
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p... 25 9.0
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 416 PVLCALRSMSWRRILLEYPVPVIEHGMRNRFH 511
P +CA W LE +P+ H +N H
Sbjct: 58 PTICAKLEKKWNAYCLENNIPISTHNEQNDSH 89
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -2
Query: 427 TQDWLAAREIDFIRHEDWPSSSPDLNPLDYKIWQYLEEKACSK--PHPNLESLKTS--LI 260
T ++L +IDF+ H+D P +S D + YL K K P E + TS +
Sbjct: 171 TPEFLEEHKIDFVAHDDIPYASDDSGDI------YLPVKKVGKFIPTKRTEGVSTSDLIT 224
Query: 259 KAAADIDMDLVR 224
+ D D ++R
Sbjct: 225 RIIRDYDQYVMR 236
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -2
Query: 487 FNNRHWVFQQDSAPAHRAKSTQDW 416
FNN +W ++++ AH A +W
Sbjct: 1280 FNNEYWKIREEAGEAHLAGKEFEW 1303
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 373 ASLRAG*SRFHAPPASLVCSSLYELAP 453
A L A +R HA P +VCS +Y+L+P
Sbjct: 293 AQLVAQAARHHATPV-VVCSGIYKLSP 318
>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 352 NPLDYKIWQYLEEKAC--SKPHPNLESLKTSLIKAAADIDMDLVRAAIDD 209
N L Y I + E + C S PHP+ + + A + +D++R +DD
Sbjct: 48 NSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDD 97
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -2
Query: 478 RHWVFQQDSAPAHRAKST-QDWLAAREIDFIRHEDWPSSSPD 356
++WV Q S + + T W+ E+D +EDW D
Sbjct: 67 KNWVRQPFSISSRKDDFTLHHWVLKSEVDSEAYEDWNKDETD 108
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = -1
Query: 146 VIRIYVLLSSF---WY-----MIGYIMNKLVSIILH*TCDRIYDLTRYIYFF 15
++ ++L SSF W M+G + ++++ +H D ++ L +YFF
Sbjct: 360 IVAPFILASSFLSRWLEDRHIMLGGLFLGILAVAIHLVLDAVHKLPMQVYFF 411
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 206 AAQIEGLYSKSRRSF*INFS 147
AAQ+ GLY + +R+F +FS
Sbjct: 362 AAQLNGLYPQKKRAFVSHFS 381
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -2
Query: 370 SSSPDLNPLDYKIWQYLEEKACSKPHPNLESLK 272
S S D P + +W +EK K H +++ K
Sbjct: 68 SKSEDYQPSNVNVWALRKEKMIPKKHSHVKQEK 100
>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 334 IWQYLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRA 221
+WQY + P P+ L L K D+D+ +V++
Sbjct: 73 LWQYGYKPTVYYPKPSSPELYKRLCKQLDDLDIPVVKS 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,158
Number of Sequences: 5004
Number of extensions: 48575
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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