Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447           31   0.42 
08_02_1604 - 28163318-28163347,28164594-28164911                       28   4.0  
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193     28   4.0  
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091...    27   6.9  
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369...    27   9.1  
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362...    27   9.1  
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627     27   9.1  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    27   9.1  
03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172           27   9.1  

>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
          Length = 420

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 519 RTLWNLFLIPCSITGTGYSNKIRRQLIERRAHKTGWRRVKSTSSGT 382
           RTL       C I G G+  +   Q+  RR HK  WR VK  ++ T
Sbjct: 23  RTLLESDRYVCEICGQGFQREQNLQM-HRRRHKVPWRLVKRPAAAT 67


>08_02_1604 - 28163318-28163347,28164594-28164911
          Length = 115

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 283 PNWDEALSTPFPPS 324
           PNWD+ L+ P PPS
Sbjct: 53  PNWDDKLTLPLPPS 66


>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
          Length = 476

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -3

Query: 519 RTLWNLFLIPCSITGTGYSNKIRRQLIERRAHKTGWR-RVKSTSSGTKTGPPP 364
           RTL       C I G G+      QL  RR H   W+ R +  + G   G PP
Sbjct: 73  RTLLATNRFVCEICGKGFQRDQNLQL-HRRGHNLPWKLRQRGGAGGGGGGEPP 124


>01_06_1312 -
           36205549-36206649,36207558-36207883,36209083-36209198,
           36210472-36211577
          Length = 882

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 427 TQDWLAAREIDFIRHEDWPSSSPDLNPLDYK 335
           T+D+L    ID   H    SSSPD NP D +
Sbjct: 35  TEDFLRGDAIDDTTHVASDSSSPDDNPSDIR 65


>12_02_0785 +
           23135764-23135973,23136061-23136713,23136822-23136903,
           23137031-23137113,23137229-23137361,23137493-23137664,
           23137929-23138656
          Length = 686

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 460 QDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDYK 335
           + S P+   K    WL A    F    DW  +    +PL Y+
Sbjct: 507 RSSLPSGTPKRKYAWLVAPNSIFYAEHDWKIADAPFDPLQYQ 548


>07_03_1347 +
           25932185-25932748,25933151-25933755,25935797-25936214,
           25936433-25936555,25936775-25936989,25937157-25937412,
           25937844-25938149,25938764-25938820,25939635-25939685
          Length = 864

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 295 EALSTPFPPSIAISCNLTDSNLDWRR 372
           E L  P+P SI+   ++  +NL WRR
Sbjct: 16  ERLRPPYPRSISCHASIHSTNLWWRR 41


>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
          Length = 419

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 277 VTPNWDEALSTPFPPSI 327
           +TP  DE+  TPFPPS+
Sbjct: 218 LTPKADESPKTPFPPSL 234


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 283 PNWDEAL-STPFPPSIAISCNLTDSNLDWRRASL 381
           PN D+   STP  P  ++SC+ T S L  R  SL
Sbjct: 137 PNDDDLCPSTPLSPMSSVSCSSTASTLVTRSCSL 170


>03_01_0277 - 2127874-2128026,2128134-2129785,2133121-2133172
          Length = 618

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = -2

Query: 466 FQQDSAPAHRAKSTQDWLAAREI-DFIRHEDWPSSSPDLNPLDYKIWQY-LEEKACSKPH 293
           F        +A+S    +   EI   I  E W  SSP ++PL     +  + EK  S   
Sbjct: 188 FFHSGTKMRKARSKSHIITQSEILKLISPETWEISSPGVSPLKKSTAELSMHEKMVSSDT 247

Query: 292 PNLESLKTSLIKAAADIDMDLVRAAIDD 209
           P++ S +  L    + +   L++    D
Sbjct: 248 PSMSSNQPVLSSCPSSLSAGLLQCIWKD 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,257,021
Number of Sequences: 37544
Number of extensions: 333771
Number of successful extensions: 794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)