Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    47   1e-07
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 34/118 (28%), Positives = 52/118 (44%)
 Frame = -2

Query: 517 NLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDWLAAREIDFIRHEDWPSSSPDLNPLDY 338
           N VE     + N +  VF  D+A  H +  T+  L     D + H   P  SPDL P DY
Sbjct: 225 NAVEEKRPELTNRKGVVFHHDNARPHTSLVTRQKLLELGWDVLPH---PPYSPDLAPSDY 281

Query: 337 KIWQYLEEKACSKPHPNLESLKTSLIKAAADIDMDLVRAAIDDWPRRLKACIQNHGGH 164
            +++ L+     K   N + +K+ LI+  A+ +       I   P R +  I  +G H
Sbjct: 282 FLFRSLQNSLNGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNGQH 339


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 229 VRAAIDDWPRRLK 191
           + AA+D+WPR L+
Sbjct: 400 ITAAVDEWPRLLR 412


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 229 VRAAIDDWPRRLK 191
           + AA+D+WPR L+
Sbjct: 453 ITAAVDEWPRLLR 465


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 520 TNLVEPVSHTMFNNRHWVF 464
           + ++ PVS  +FN  +W+F
Sbjct: 468 SRIIFPVSFMLFNAIYWIF 486


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 371 GPVFVPDEVDFTRRQP 418
           G V+  DEV+F +R+P
Sbjct: 570 GAVWTVDEVEFYKRRP 585


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/34 (20%), Positives = 21/34 (61%)
 Frame = -1

Query: 137 IYVLLSSFWYMIGYIMNKLVSIILH*TCDRIYDL 36
           +YVL++  W + G++ +  +++ +  +   I++L
Sbjct: 244 VYVLVNGSWSLPGFVCDFYIAMDVTCSTSSIFNL 277


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 489 CSITGTGYSNKIRRQLIERRAHKT 418
           CS+T + +  K+R  L + R   T
Sbjct: 349 CSVTNSPHQKKLRFHLAKERKAST 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,190
Number of Sequences: 438
Number of extensions: 3809
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)