Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   5.2  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   6.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   9.0  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 37  LSIECNYFMYKYIFNAHKSFTFLYLNSQL 123
           + I  NY +   + N+HKSF    L+S +
Sbjct: 566 VGISLNYIVRNGLINSHKSFVLTVLSSSV 594


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 31  TTLSIECNYFMYKYIFNAHKSFTFLYLNSQL*ITNEQVN*VYVTLYF 171
           TT+S+ C++ ++ ++F A   FT +  N    +    V+  ++TL F
Sbjct: 53  TTISLCCDFPLFNFLFIAIPYFTEILYNDSSLLWFLFVSLCFITLSF 99


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = -3

Query: 291 DARSRVCTYIYVISCDYKFVNTRDTVR----VSRLLYHP 187
           DAR   C Y   I+ D K +   D V+    V  L  HP
Sbjct: 294 DARDAACLYALKIAKDSKIIKNLDLVKEHAFVKTLFKHP 332


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = -1

Query: 506 LVIEHRFEHNYLLMVCTTHGFG*IYFINYKLTI*QIFILNNEVYVVVTCKADHGLI*VLS 327
           +++  RF    L  V  +     IY +NY L+   I+ +N+E  ++   KA+      LS
Sbjct: 670 ILLHSRFHSRVLGGVTVSFQCSPIYRVNYGLSSDCIYSINSESSLIDQRKAEE----ALS 725

Query: 326 AVNN 315
            VNN
Sbjct: 726 FVNN 729


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,924,183
Number of Sequences: 5004
Number of extensions: 34776
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)