Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0098 - 41071997-41072248,41072387-41072519,41072694-410728...    31   0.56 
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432...    27   9.1  

>01_07_0098 -
           41071997-41072248,41072387-41072519,41072694-41072886,
           41072975-41073049,41073140-41073266,41073613-41073833,
           41073957-41074110
          Length = 384

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -2

Query: 205 PSSTPCSTIYQDCEEKYIL*RIECMYVYTYSINLLDFIISCTVSSLLT 62
           PSS+ CS+IYQD E   +    E   VY++ + LL+ I     +SL++
Sbjct: 245 PSSS-CSSIYQDPEVHSLAQLSESSDVYSFGVFLLELITGKEAASLIS 291


>05_04_0080 -
           17742425-17742578,17742855-17743038,17743202-17743273,
           17743343-17743469,17743915-17744135,17744234-17744387
          Length = 303

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 205 PSSTPCSTIYQDCEEKYIL*RIECMYVYTYSINLLDFIISCTVSSLLT 62
           PS    S++YQD E + +L   E   VY++ + LL+ I     + L++
Sbjct: 240 PSHGFSSSVYQDPEVQSVLQFSESSDVYSFGVFLLELITGREAACLIS 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,562
Number of Sequences: 37544
Number of extensions: 159833
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)