Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323H02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   2.7  
U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    28   4.7  
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    27   6.2  

>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 450 VLF*HVFISLVCFFVCFVLISXIFDTYQRNQK 355
           V F  V +SLVC  +C    S + D Y R +K
Sbjct: 66  VRFLWVVVSLVCICLCMYSFSHVKDKYDRKEK 97


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 450 VLF*HVFISLVCFFVCFVLISXIFDTYQRNQK 355
           V F  V +SLVC  +C    S + D Y R +K
Sbjct: 66  VRFLWVVVSLVCICLCMYSFSHVKDKYDRKEK 97


>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 156 YFSSQS*YMVEQGVELGQRTTTSVKLVSLININNTCLHI 272
           YF+SQS   V + + +      +V LV   NI+  C+H+
Sbjct: 145 YFASQSGMQVGEILRVASDENNAVPLVKKANIDALCIHL 183


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -2

Query: 178 YQDCEEKYIL*RIECMYVYTYSINLLDFIISCTVSSLLTVLRLKAALYLLISYL 17
           YQ+    Y+L +I C  VYT ++ L  F ++   + ++  +     + L+ S++
Sbjct: 166 YQEEAVPYVLKQIPCYSVYTKTVPLFVFTLNPLPAIIVVAIFASMQIILMTSFI 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,027,560
Number of Sequences: 27780
Number of extensions: 184929
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)