Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    28   0.73 
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    26   3.0  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    26   3.9  
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    26   3.9  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   5.2  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   9.0  

>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 221 LLAFPSKSPYYTVMVRFISTLYNPNEY 301
           +L+F  + P    +V+F+ST+++PN Y
Sbjct: 56  VLSFDEQYPNKPPLVKFVSTMFHPNVY 82


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 337 SHRSICHNILKSVFVRIIEGRYKAHHY 257
           S  S+ HN   +  + ++E  Y AH+Y
Sbjct: 2   SAESLLHNTFSTEQIEVLENEYAAHNY 28


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 239 KSPYYTVMVRFISTLYNPNEYRLQNIM 319
           K P+Y V     +T  NPN Y+L++ +
Sbjct: 357 KIPFYDVTSHHYTTPLNPNGYKLESFI 383


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 233 PSKSPYYTVMVRFISTLYNPNEYRLQN 313
           P++   Y V+V  ++T  NP +Y+L N
Sbjct: 38  PAELGPYDVLVEVVATSINPLDYKLMN 64


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 85  TSSGFVSFSHICALSQILNS**TTIIRHLNLK-KH*IDKINK 207
           T   F  FSHI A+    N      I  LN+K KH  D +N+
Sbjct: 113 TMKSFTRFSHIVAIRSTGNCFSWDTIERLNIKPKHWRDLVNE 154


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 224 LAFPSKSPYYTVMVRFISTLYNPNEYRLQNI 316
           L  P + P     VRF++ +Y+PN  +L  I
Sbjct: 55  LFLPDEYPMMPPNVRFLTKIYHPNVDKLGRI 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,649
Number of Sequences: 5004
Number of extensions: 42982
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)