Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323G07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 88 6e-19
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 29 0.56
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 3.0
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 3.0
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.0
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 3.9
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 3.9
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 5.2
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 5.2
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 6.8
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 6.8
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 25 9.0
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 9.0
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 88.2 bits (209), Expect = 6e-19
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 1/154 (0%)
Frame = +1
Query: 52 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 228
+IF I ++A +L +RSL+T+ ASA PPVQ++GL+G YAS+L++AA K LD
Sbjct: 3 HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59
Query: 229 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 408
VEK L + ++ + +++I +P + R K + + P N +L +N
Sbjct: 60 VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119
Query: 409 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLD 510
RL L + F +M A RGE+ ++ +A PLD
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLD 153
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 504 WFGCNNFTSYFTPVRSHHNLKSINDSLQFPQATI 403
W G +F + F + +H + S+N L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 341 CFNASTFMLLFIVGLMMNSLSF-ASVLID 258
C F+LL GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 446 LKALMTASSFPKRPFSASNPSRLPVVG 366
L +T + P++PFS S+P+ P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 407 PFSASNPSRLPVVGERLILLATCFNASTFML 315
PFS S+LPV G ILL F +T+++
Sbjct: 3 PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +1
Query: 160 FGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIK 312
+G E + A K+ D ++KEL +S+K+ A+ I++ I+
Sbjct: 602 YGEEDPDVIVCYIGADDGKSPDQIQKELADLAESVKSSAEASAKIVSEIIQ 652
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 389 PSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSFASV 267
P + P ++ CF A F+++FI + LSF +V
Sbjct: 188 PLKRPNTSISNVIWLICFGAPLFLVIFICYIFFTVLSFFNV 228
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 328 DALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVAC 483
+AL N+I + T + LGL+ RL + +MA H G + C
Sbjct: 5 EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 168 QSKYLHWRFYHLC*CDTCAQR 106
+ K LHWRF CD C +
Sbjct: 555 ECKSLHWRFSDRSNCDECGHK 575
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 449 ILKALMTASSFPKRPFSASNPSRLPVVGERL 357
+ + L +SS P RPFS NP+ V + L
Sbjct: 47 LTEILNDSSSLPARPFSLPNPNNSTVEKQSL 77
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 6.8
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 223 DIVEKELCQFQQSIKTDA-KLKEFII--NPTIKRSMKV-DALKHVANKISLSPTTGNLLG 390
D + K++ ++ SI ++ L E I+ +P I +S V DA H+++ +SP NL
Sbjct: 144 DTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSATVQDAEIHISSIYVISPIKKNLPF 203
Query: 391 LLAENGR 411
L+ + GR
Sbjct: 204 LVEDAGR 210
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = +1
Query: 79 ALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQ 258
+LK + S+ + A+ VKP ++ E R SAA + DIV + +Q
Sbjct: 272 SLKSTIFFLSIPSLEATPITVKPESEMGDWESRNVWKEVSAALASGNYDIVSSKKSTIEQ 331
Query: 259 SIKTDAKLKE 288
S + D + KE
Sbjct: 332 S-QRDMRKKE 340
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 155 KYLDWKVGMLPLFFQQ 202
K+ WKVG+LP F +Q
Sbjct: 315 KFGPWKVGLLPKFHKQ 330
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 455 IIILKALMTASSFPK-RPFSASNPSRLPVVGERLILLATCFNAS 327
++IL+ M +S+ R + N + L VVGE TC+NA+
Sbjct: 857 LVILETGMVKASYQMDRESLSENITCLCVVGELPFFSKTCYNAT 900
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,782
Number of Sequences: 5004
Number of extensions: 45141
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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