Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323G07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 79 2e-15
02_05_0759 + 31545473-31546204 50 1e-06
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852... 29 2.3
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 29 3.0
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 28 5.2
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 27 6.9
04_01_0487 + 6406826-6407086,6413538-6413996,6414401-6414570,641... 27 6.9
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 27 9.1
02_02_0707 + 13144147-13144788,13145115-13148663 27 9.1
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 9.1
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 79.0 bits (186), Expect = 2e-15
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Frame = +1
Query: 103 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIKTDA 276
R ++ VA + + +K P ++G G YASALF A+K LD VE E+ ++ K
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82
Query: 277 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 456
+FI + ++ + +V A+ + + S T N L +LA+NGRL ++ + F +
Sbjct: 83 LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142
Query: 457 AAHRGEVACEVVTAKPLDQAQ 519
AH+GEV V T PL + +
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKE 163
>02_05_0759 + 31545473-31546204
Length = 243
Score = 49.6 bits (113), Expect = 1e-06
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Frame = +1
Query: 178 YASALFSAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 357
YA+AL AS+ L+ +L + ++ +A + EF NPT+ R K + +A
Sbjct: 64 YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122
Query: 358 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRG-EVA--CEVVTAKPLDQAQ 519
L N L ++ +NGR G + ++ F+ + G EVA VV + D AQ
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFENAFNSLTGTEVATVTSVVQLESQDLAQ 179
>07_03_1116 -
24084162-24084201,24084481-24084570,24084640-24085220,
24085653-24085822,24086006-24087074
Length = 649
Score = 29.1 bits (62), Expect = 2.3
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Frame = +1
Query: 166 LEGRYASALFSAASKTKALDIVEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 339
LE Y S A K KAL+ + E C+ ++ AK + F+ R V AL
Sbjct: 56 LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115
Query: 340 HVANKISLSPTTGNLLGLLAENG-RLGKLEAVINAFKIMMAAHRGEVAC---EVVTAKPL 507
V K + L G+L NG + K+ N + A+ A E A P+
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDKKVRTSTNDMNALCASEENTTASGLGEPSEASPV 170
Query: 508 D 510
D
Sbjct: 171 D 171
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 461 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 366
AA+ +L+ A++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 244 RVLFPRCQAPWSLMLLKKERKHTDLPIQILALEVLPFVLMRHLCSKSEPADSPLKP 77
RV P + S ++ RK + L + L ++ F+ +C P DSP+ P
Sbjct: 317 RVQTPEPEPTASSERARRPRKRSSLRFLVAPLALVVFMAAALICVPPPPVDSPVMP 372
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 27.5 bits (58), Expect = 6.9
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +1
Query: 19 PKV*KILLTCANIFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASA-LF 195
PK+ + NIFLN+ AL GN + L + + V + Y SA +
Sbjct: 1016 PKIIHRDIRAVNIFLNEDFEALVGNFCLAKLEDDMDTDDRTAVRGVVGHIAPEYLSAGIL 1075
Query: 196 SAASKTKALDIVEKELCQFQQSIKTD--AKLKEFIINPTIKRSMKVDALK 339
S + I+ EL ++++ D A+ ++ + +KR +K LK
Sbjct: 1076 SEKTDVYGYGIMLLELITGKRALYHDGRARDEDIFLLDWVKRLLKEKKLK 1125
>04_01_0487 +
6406826-6407086,6413538-6413996,6414401-6414570,
6415146-6415175,6415777-6415939,6416020-6417132
Length = 731
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 409 RLGKLEAVINAFKIMMAAHRGEVACEVVT 495
+LG +EAV +AF+ M+ AH + E+ T
Sbjct: 698 KLGYVEAVEDAFRCMVEAHPNQPTLEIET 726
>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 410 RPFSASNPSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSL 282
RP + S P+ PV + L +T + +L IVGL NS+
Sbjct: 1452 RPDADSIPTDAPVAEAEMELSSTIIHLPWVCMLIIVGLFNNSM 1494
>02_02_0707 + 13144147-13144788,13145115-13148663
Length = 1396
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +1
Query: 91 NLLVRSLSTSVASAQMV--KPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSI 264
++L L++S A+ Q+V P + +GL GR++ L+ A +++ E++L + +
Sbjct: 873 DMLPSKLASSRAAPQVVPISTPKKSYGLMGRFSQLLYLDAEESR-FQPTEEQLAAQRNAS 931
Query: 265 KTDAKLKEFIINPTIKRSMKVDALKHVANKIS 360
+T K + I T + ++ D+L ++A ++
Sbjct: 932 ETIKKCQIGTIF-TESKFLQADSLLNLARALT 962
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.1 bits (57), Expect = 9.1
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Frame = +1
Query: 184 SALFSAASKTK-ALDIVEKELCQFQQSIKTDAKLKEFIINPTIKR-SMKVDALKHVANKI 357
++LF S+ + ALD EK Q +TD +LKE + ++ +K + +H + K
Sbjct: 457 ASLFDKDSELRRALDANEK----LQSETRTDNELKEQLQGALLENGQLKRELQQHTSEKK 512
Query: 358 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHR--GEVACEVVT 495
+ + T + AE + G++EA + ++ R E A ++T
Sbjct: 513 ASAKAT-DAADAAAEAAKKGEMEAELRRLRVQAEQWRKAAETAMALLT 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,866,365
Number of Sequences: 37544
Number of extensions: 277225
Number of successful extensions: 777
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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