Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323G07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 136 1e-32
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 134 5e-32
U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiestera... 29 2.7
U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiestera... 29 2.7
U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiestera... 29 2.7
U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiestera... 29 2.7
U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiestera... 29 2.7
U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiestera... 29 2.7
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 29 2.7
AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical... 28 3.5
U40060-8|AAA81146.1| 218|Caenorhabditis elegans Hypothetical pr... 28 4.7
U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical pr... 27 6.2
U46675-5|AAL32215.1| 281|Caenorhabditis elegans Endophilin-rela... 27 6.2
U46675-4|AAB52640.1| 366|Caenorhabditis elegans Endophilin-rela... 27 6.2
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 136 bits (328), Expect = 1e-32
Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Frame = +1
Query: 55 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 228
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71
Query: 229 VEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 408
+ +L + K + K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENG
Sbjct: 72 ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131
Query: 409 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQA 516
RL KLE+V+++F+ +M AHRGE+ +V +A+ L +
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSS 167
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 134 bits (323), Expect = 5e-32
Identities = 65/143 (45%), Positives = 99/143 (69%), Gaps = 2/143 (1%)
Frame = +1
Query: 94 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVEKELCQFQQSIK 267
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K LD + +L + K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63
Query: 268 TDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFK 447
+ K +EF+++PT+K + K A++ ++ K+ L+ TGN LGLLAENGRL KLE+V+++F+
Sbjct: 64 DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123
Query: 448 IMMAAHRGEVACEVVTAKPLDQA 516
+M AHRGE+ +V +A+ L +
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSS 146
>U28729-6|AAA68292.1| 549|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforma protein.
Length = 549
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 196 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 372
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 110 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 169
Query: 373 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 477
+G + + + + + + K+ +H G V
Sbjct: 170 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 204
>U28729-5|AAO38607.1| 674|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformd protein.
Length = 674
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 196 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 372
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 235 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 294
Query: 373 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 477
+G + + + + + + K+ +H G V
Sbjct: 295 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 329
>U28729-4|AAN60496.1| 599|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformc protein.
Length = 599
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 196 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 372
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 160 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 219
Query: 373 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 477
+G + + + + + + K+ +H G V
Sbjct: 220 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 254
>U28729-3|AAO38608.1| 612|Caenorhabditis elegans Phosphodiesterase
protein 4, isoforme protein.
Length = 612
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 196 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 372
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 173 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 232
Query: 373 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 477
+G + + + + + + K+ +H G V
Sbjct: 233 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 267
>U28729-2|AAK77625.1| 626|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformb protein.
Length = 626
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 196 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 372
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 187 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 246
Query: 373 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 477
+G + + + + + + K+ +H G V
Sbjct: 247 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 281
>U28729-1|ABB88209.1| 673|Caenorhabditis elegans Phosphodiesterase
protein 4, isoformg protein.
Length = 673
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = +1
Query: 196 SAASKTKALDIVEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALK-HVANKISLSPT 372
S + +K ++ KEL F +S K+ ++ +F+I + + +++ V ++ T
Sbjct: 234 SEMASSKFRKMLNKELSHFAESSKSGTQVSKFLITTYMDKEEDEPSIEIEVPTEVQGPST 293
Query: 373 TGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEV 477
+G + + + + + + K+ +H G V
Sbjct: 294 SGPMTLSILKKAQTAAMNKISGVRKLRAPSHDGHV 328
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 228 RGKRTLPVSTVYQN*CKAQGIHHQPDNKKKHEGRCVETCRQ*DQSFSYNW 377
R RTL V+++++ + I PD + KHEG CV+ + + +N+
Sbjct: 406 RESRTLKVTSIHEKPYVIEKI--MPDGRIKHEGFCVDLLDKLAEMLHFNY 453
>AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical
protein F25E5.2 protein.
Length = 338
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 187 ALFSAASKTKALDIVEKELCQFQQSIK 267
+LF+AA+KT + D+VE LC + S +
Sbjct: 134 SLFTAANKTISQDLVENGLCSKEDSFR 160
>U40060-8|AAA81146.1| 218|Caenorhabditis elegans Hypothetical
protein F38B6.2 protein.
Length = 218
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 251 NWQSSFSTMSSAL--VFDAAEKRAEAYRPSNPNTCTGGFTICADA 123
+WQS T ++ D A +P+NP TCTG CA A
Sbjct: 33 SWQSPDLTYVPSINQCSDYTTGNGVACKPNNPFTCTGRNPFCATA 77
>U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical
protein B0218.2 protein.
Length = 571
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -1
Query: 473 SPRCA-AIIILKALMTASSFPKRPFSASNPSRLPVVGERLILLATCFNASTFMLLFIVGL 297
+P C A++ K ++ S PF P R+P V R+ L A C +A TF+ ++
Sbjct: 338 TPVCQRAVMEAKQILEDSGHTLVPF---RPPRVPEV-LRMFLRAVCVDAGTFLSKKLMND 393
Query: 296 MMNSLSFASVLI 261
+++ L + V++
Sbjct: 394 IIDPLLYTQVVL 405
>U46675-5|AAL32215.1| 281|Caenorhabditis elegans Endophilin-related
protein protein1, isoform b protein.
Length = 281
Score = 27.5 bits (58), Expect = 6.2
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +1
Query: 55 IFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVE 234
+F K+ LK + +R + S M + Q FG Y SAL A L E
Sbjct: 75 VFYEKL--ELKKDGAIRQNNLEQLSTAMTEAGEQ-FGETTPYGSALLKVAQTENRLGQAE 131
Query: 235 KELCQFQQSIKTDAKLKEFIIN--PTIKRSMKV 327
+ELC Q + T ++ F+ TI++ KV
Sbjct: 132 RELCG-QAATNTLLPIRRFLEGDMKTIQKERKV 163
>U46675-4|AAB52640.1| 366|Caenorhabditis elegans Endophilin-related
protein protein1, isoform a protein.
Length = 366
Score = 27.5 bits (58), Expect = 6.2
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +1
Query: 55 IFLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIVE 234
+F K+ LK + +R + S M + Q FG Y SAL A L E
Sbjct: 75 VFYEKL--ELKKDGAIRQNNLEQLSTAMTEAGEQ-FGETTPYGSALLKVAQTENRLGQAE 131
Query: 235 KELCQFQQSIKTDAKLKEFIIN--PTIKRSMKV 327
+ELC Q + T ++ F+ TI++ KV
Sbjct: 132 RELCG-QAATNTLLPIRRFLEGDMKTIQKERKV 163
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 389 PSRLPVVGERLILLATCFNASTFML 315
P+ PV+GE ++ ATCF F L
Sbjct: 51 PTWYPVMGEAWVIRATCFGVLVFNL 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,158,181
Number of Sequences: 27780
Number of extensions: 253962
Number of successful extensions: 876
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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