Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323G06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   129   2e-31
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   126   2e-30

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  129 bits (312), Expect = 2e-31
 Identities = 63/134 (47%), Positives = 79/134 (58%)
 Frame = +2

Query: 2   TSKKXTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 181
           T    TRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH
Sbjct: 3   THTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 182 FXKNKNFCPXLNLDKLWTLVSEQTRLKYASAPDGKXPVINIVIAGYYXLLGKGKLPKQPV 361
             KN  + P +NLD+LWTLV  +TR KY        PVIN++ +GY  +LGKG+LP  PV
Sbjct: 63  LMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPV 122

Query: 362 IAKAKFFSKSAXEE 403
           I + ++ S+ A E+
Sbjct: 123 IIQTRYVSRRAEEK 136


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score =  126 bits (305), Expect = 2e-30
 Identities = 61/134 (45%), Positives = 79/134 (58%)
 Frame = +2

Query: 2   TSKKXTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 181
           T    TRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR FH
Sbjct: 3   THVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFH 62

Query: 182 FXKNKNFCPXLNLDKLWTLVSEQTRLKYASAPDGKXPVINIVIAGYYXLLGKGKLPKQPV 361
             KN  + P +NLD+LWTL+  + R KY        PVIN++ +GY  +LGKG+LP+ PV
Sbjct: 63  LMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPV 122

Query: 362 IAKAKFFSKSAXEE 403
           I + ++ S+ A E+
Sbjct: 123 IVQTRYVSRRAEEK 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,675,705
Number of Sequences: 5004
Number of extensions: 27040
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)