Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323G06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                        130   9e-31
03_04_0027 + 16593133-16593573                                        125   2e-29
02_01_0563 + 4134954-4135388                                          122   1e-28
03_02_1007 + 13160772-13161311                                         28   4.0  
08_02_1287 - 25886509-25886766,25886887-25887004,25887098-258871...    27   6.9  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    27   9.1  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score =  130 bits (313), Expect = 9e-31
 Identities = 60/134 (44%), Positives = 84/134 (62%)
 Frame = +2

Query: 2   TSKKXTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 181
           TS +  RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH
Sbjct: 3   TSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62

Query: 182 FXKNKNFCPXLNLDKLWTLVSEQTRLKYASAPDGKXPVINIVIAGYYXLLGKGKLPKQPV 361
             +NK + P +N+++LW++V  +   + A A  GK P++++   GY+ +LGKG LP++P+
Sbjct: 63  RLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEKPI 120

Query: 362 IAKAKFFSKSAXEE 403
           + KAK  SK A ++
Sbjct: 121 VVKAKLISKVAEKK 134


>03_04_0027 + 16593133-16593573
          Length = 146

 Score =  125 bits (302), Expect = 2e-29
 Identities = 64/135 (47%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
 Frame = +2

Query: 2   TSKKXTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 181
           T  K  RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH
Sbjct: 3   TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62

Query: 182 FXKNKNFCPXLNLDKLWTLVSEQTRLKYASAPDGKXPVINIVIAGYYXLLGKGKLPKQ-P 358
              N+  CP +N+++LW++V      K A A  GK PVI++   GY  +LGKG LP Q P
Sbjct: 63  KLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRP 119

Query: 359 VIAKAKFFSKSAXEE 403
           ++ KAK  SK A ++
Sbjct: 120 IVVKAKLISKVAEKK 134


>02_01_0563 + 4134954-4135388
          Length = 144

 Score =  122 bits (295), Expect = 1e-28
 Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
 Frame = +2

Query: 2   TSKKXTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 181
           T  K  RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH
Sbjct: 3   TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 62

Query: 182 FXKNKNFCPXLNLDKLWTLVSEQTRLKYASAPDGKXPVINIVIAGYYXLLGKGKL-PKQP 358
              N+  CP +N+++LW++V  +     A A  GK PVI++   GY  +LGKG L P++P
Sbjct: 63  RLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPERP 117

Query: 359 VIAKAKFFSKSAXEE 403
           ++ KAK  SK A ++
Sbjct: 118 IVVKAKLISKVAEKK 132


>03_02_1007 + 13160772-13161311
          Length = 179

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 262 VCICSRWQGPRHQYCHSWILXVARQR 339
           V + +R Q P + YCH W   VA  R
Sbjct: 26  VSVAARPQAPYYYYCHGWKEGVAESR 51


>08_02_1287 -
           25886509-25886766,25886887-25887004,25887098-25887177,
           25887258-25887338,25887493-25887576,25888013-25888171,
           25888660-25888752,25888928-25888945,25889194-25889280,
           25889634-25889760,25889849-25889920,25890319-25890404,
           25890519-25890626,25890709-25890850,25891432-25891508,
           25891902-25892054,25892411-25892503,25892608-25892790,
           25892924-25893334
          Length = 809

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 103 W*APSQNQHGQVPSWILWQTWDEK 174
           W A    Q GQ P W +W  W+ K
Sbjct: 490 WDAGGLYQVGQFPHWKIWSEWNGK 513


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 263 YASAPDGKXPVINIVIAGYYXLLGKGKLP 349
           Y  +PD     ++I+I  Y+ LLG+GK+P
Sbjct: 638 YQLSPDAS---LDIIIHSYHQLLGEGKVP 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,317,964
Number of Sequences: 37544
Number of extensions: 182746
Number of successful extensions: 365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)