Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS323G06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   147   5e-36
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    82   2e-16
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    28   3.5  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  147 bits (356), Expect = 5e-36
 Identities = 67/131 (51%), Positives = 88/131 (67%)
 Frame = +2

Query: 11  KXTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFXK 190
           + TRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR FH  K
Sbjct: 6   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNK 65

Query: 191 NKNFCPXLNLDKLWTLVSEQTRLKYASAPDGKXPVINIVIAGYYXLLGKGKLPKQPVIAK 370
           N+++CP +N+++LW+LV ++ R K   A  GK PVI+    GY+ +LGKG LP+ P+I K
Sbjct: 66  NQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVK 122

Query: 371 AKFFSKSAXEE 403
           A+FFS  A ++
Sbjct: 123 ARFFSHEAEQK 133


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 37/79 (46%), Positives = 55/79 (69%)
 Frame = +2

Query: 167 MRNFHFXKNKNFCPXLNLDKLWTLVSEQTRLKYASAPDGKXPVINIVIAGYYXLLGKGKL 346
           MR FH  KN+++CP +N+++LW+LV ++ R K   A  GK PVI+    GY+ +LGKG L
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 347 PKQPVIAKAKFFSKSAXEE 403
           P+ P+I KA+FFS  A ++
Sbjct: 58  PETPLIVKARFFSHEAEQK 76


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +2

Query: 101 GGEHHHRINMDKYHPGYF-----GKLGMRN-FHFXKNKNFCPXLNLDKLW 232
           G E HH    D YHP  F      +L + N + F KNK +C     D+L+
Sbjct: 285 GVECHHHSTTDTYHPNCFRCETCRQLLVDNIYFFYKNKYYCGRHYADQLY 334


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 313 SYDNIDDGXLA-IWSRCILQPRLF 245
           S  N+  G L  IWSRCI QP  F
Sbjct: 14  SSGNVQKGKLLNIWSRCIAQPSSF 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,467,720
Number of Sequences: 27780
Number of extensions: 154376
Number of successful extensions: 264
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)