Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS323G05f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 116 2e-27
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.045
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 31 0.10
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 28 0.73
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 28 0.97
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 1.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 1.3
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 1.7
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 27 1.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.7
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 27 2.2
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.0
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 3.0
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 26 3.0
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 26 3.9
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 26 3.9
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 26 3.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.9
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 25 5.2
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 5.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 6.8
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo... 25 6.8
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 6.8
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 25 6.8
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 6.8
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 25 9.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 9.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.0
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 25 9.0
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 25 9.0
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 25 9.0
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 116 bits (280), Expect = 2e-27
Identities = 58/152 (38%), Positives = 90/152 (59%)
Frame = +2
Query: 65 NHPEWNLKIIQLYETSLVRHGLMTMGPTGSGKTTCIHTLMAALTEVGRPHREMRMNPKAI 244
N+ LKI+QLY+ S +G++ +G TGSGK+ L +AL +G ++PKA+
Sbjct: 2149 NNQYLKLKIMQLYQMSEAYNGIILLGKTGSGKSQIFRILQSALLNIGIDCIVYVISPKAL 2208
Query: 245 TAPQMFGRLDVATNDWTDGIFSTLWRRALKVKKSDTTWIVLDGPVDAVWIENLNSVLDDN 424
T +FG +++ T +WTDG+F+ L R+ V D + W+E +NS+LDDN
Sbjct: 2209 TKESLFGSMNMDTREWTDGVFTKLLRKTRDSCYYKRYMFVFDDELSPEWVEAMNSLLDDN 2268
Query: 425 KTLTLANGDRITMAQNSKLVFEPDNVDNASPA 520
KTLTL+NG+RI + K+ FE D+V + + A
Sbjct: 2269 KTLTLSNGERIALQPYVKIFFEADSVASLTRA 2300
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 32.3 bits (70), Expect = 0.045
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Frame = +2
Query: 128 LMTMGPTGSGKTTCIHTLMAALTEVGRPHREMRMNPKAITAPQMFGRLDVATNDWTDGIF 307
++ GPT SGKT+ I +A T H+ +R+N T Q + + T TD
Sbjct: 897 ILIQGPTSSGKTSMIE-YVAKKT----GHKFVRINNHEHTDLQEY----IGTY-VTDDNG 946
Query: 308 STLWRRALKVKK-SDTTWIVLD----GPVDAVWIENLNSVLDDNKTLTLANGDRITMAQN 472
S +R + V+ + WIVLD P D +E LN +LDDN+ L + +
Sbjct: 947 SLSFREGVLVEALRNGYWIVLDELNLAPTDV--LEALNRLLDDNRELFIPETQVLVKPHP 1004
Query: 473 SKLVFEPDN 499
++F N
Sbjct: 1005 EFMLFATQN 1013
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 128 LMTMGPTGSGKTTCIHTLMAAL 193
L+ +G TG+GKTT I L L
Sbjct: 470 LLLVGETGTGKTTTIQLLAGLL 491
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 392 IENLNSVLDDNKTLTLANGDRITMAQNSK 478
+E LNSVL+ ++TLTL ++ +K
Sbjct: 1326 LERLNSVLELSRTLTLVEHSNAAVSLTAK 1354
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 31.1 bits (67), Expect = 0.10
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 4/30 (13%)
Frame = +2
Query: 113 LVRHG----LMTMGPTGSGKTTCIHTLMAA 190
L+R G +M +GP+GSGK+T I+TL +A
Sbjct: 26 LIRRGFQFNVMVVGPSGSGKSTLINTLFSA 55
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 83 LKIIQLYETSLV--RHGLMTMGPTGSGKTTCIHTLMAAL 193
L+ Q Y+T + R G + GP GSGKT+ ++ L L
Sbjct: 228 LRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGEL 266
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 0.97
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 128 LMTMGPTGSGKTTCIHTLMAALT-EVGRPHREMRMNPKAI 244
++ G TG GKT+C++ + L EV H MR + K +
Sbjct: 428 MLVTGVTGIGKTSCLYAICRELNFEVVEIHPGMRRSGKEL 467
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 59 LVNHPEWNLKIIQLYETSLVR---HGLMTMGPTGSGKTTCIHTLMA-ALTEVGRPHREMR 226
LV H + K+ Q ++V + ++ +GP GSGK+ + +++ A E+ +R
Sbjct: 552 LVGHMDEQTKLYQWVRQTIVLGEGNSVIIVGPRGSGKSVLVDDILSRAAQEINEKSYVVR 611
Query: 227 MN 232
+N
Sbjct: 612 LN 613
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 77 WNLKIIQLYETSLV---RHGLMTMGPTGSGKTTCIHTLMAAL 193
W +I+ E +L+ R+GL+ P GSGK+T +H + L
Sbjct: 286 WGKLLIKDSELNLINGRRYGLIA--PNGSGKSTLLHAIACGL 325
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 128 LMTMGPTGSGKTTCIHTLMAALTEVGRPHREMRMNPKAITAP 253
++ +G GSGKTT + L A L +P + ++P P
Sbjct: 11 IIVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLP 52
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +2
Query: 68 HPEWNLKIIQLYETSLVRHGLMTMGPTGSGKTTCIHTLMAALTEVGRPHREMRMNPKAIT 247
H + + ++I L T+ H L+ GP+G+GK T + ++ L G +++++ +
Sbjct: 18 HKQLSERLISLSSTNEFPH-LLVYGPSGAGKKTRVVAILREL--YGPGSEKLKIDQRTFL 74
Query: 248 AP 253
P
Sbjct: 75 TP 76
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 1.7
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = +2
Query: 131 MTMGPTGSGKTTCIHTLMAALTEVGRPHRE---MRMNPKAITAPQMFGRLDVATNDWTDG 301
+ +G GSGKTT I L A T + P+ + +PK ++ ++ +A +
Sbjct: 31 LIVGQNGSGKTTIIECLKYATTGILPPNTKGGAFIHDPKICGEKEVLAQVKLAFRNTNQV 90
Query: 302 IFSTLWRRALKVKKSDTTWIVLDGPVDAVWIENLNSVLDDNKTLTLAN 445
L VKK+ LDG + +L DN+ T++N
Sbjct: 91 KMICTRSLQLSVKKTTRQQKTLDGQL---------LILKDNERTTISN 129
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 270 WMLQP-TIGRMVFFPLCGEEL*RSRSLIPPG 359
W+ P TI +MV+FPL L S + PG
Sbjct: 116 WLTPPETIAKMVWFPLINHHLFESETDTSPG 146
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 131 MTMGPTGSGKTTCIHTLMAALTEVGRPHREMRMNP 235
+ +GP GSGK+T + L+ +GR + ++P
Sbjct: 6 VVVGPPGSGKSTYCFGMYQLLSAIGRSSIIVNLDP 40
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 131 MTMGPTGSGKTTCIHTLMAALT 196
+ +GPTGSGK++ I L+ L+
Sbjct: 645 IVIGPTGSGKSSLISALLGELS 666
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 14 GEMQRAIALVTDRTGLVNHPEWNLKIIQLYETSLVRHGLMTMGPTGSGKTTCIHTLMA 187
G +Q IA + D +V P N ++ + + R G++ GP G+GKT + + A
Sbjct: 282 GGLQAQIAQIRD---IVELPFQNPELFKFFNIMPPR-GVLLYGPPGTGKTMVMRAVAA 335
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 125 GLMTMGPTGSGKTTC 169
G+M GP G+GKT C
Sbjct: 215 GIMLYGPPGTGKTLC 229
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 113 LVRHGLMTMGPTGSGKTTCIHTLMAALTEVGRPHREMRMNPKA 241
+V+ G SGK+T LM+ + VGR + ++P A
Sbjct: 1 MVKVAAFVCGVASSGKSTFCGALMSYMKSVGRSCHLVNLDPAA 43
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 113 LVRHGLMTMGPTGSGKT 163
L RH +M +GPT SGKT
Sbjct: 170 LRRHIIMHVGPTNSGKT 186
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.8 bits (54), Expect = 3.9
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 80 NLKIIQ-LYETSLVRHGLMTMGPTGSGKTTCIHTLMAALTEVGR--PHREMRMNPKAITA 250
+LK Q +Y + L R L+T+ PTG GK+ + L+ AL E R P + M M +
Sbjct: 1192 SLKQFQSVYFSLLNRMNLITVLPTGGGKS--LSFLIPALIEKKRQTPGKVMNM-VTLVLV 1248
Query: 251 PQMFGRLDV 277
P M R D+
Sbjct: 1249 PMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 3.9
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +2
Query: 80 NLKIIQ-LYETSLVRHGLMTMGPTGSGKTTCIHTLMAALTEVGR--PHREMRMNPKAITA 250
+LK Q +Y + L R L+T+ PTG GK+ + L+ AL E R P + M M +
Sbjct: 1192 SLKQFQSVYFSLLNRMNLITVLPTGGGKS--LSFLIPALIEKKRQTPGKVMNM-VTLVLV 1248
Query: 251 PQMFGRLDV 277
P M R D+
Sbjct: 1249 PMMSLRQDM 1257
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 266 VQTFAEQ*WLLDSSSSPCAVSLL 198
V+ F ++ W L + S PC V LL
Sbjct: 149 VKVFRQEIWALKTLSHPCVVQLL 171
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 193 DGSRETAQGDEDESKSHHCSANVWTLGCCNQRLDGWYFFHFVE 321
+ R+ AQ ES H NV+T N+ D W + H+++
Sbjct: 973 EADRQRAQFANPES-DHLTLLNVYTTWKMNRCSDNWCYEHYIQ 1014
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 86 KIIQLYETSLVRHGLMTMGPTGSGKTTCIHTLMAAL 193
+I L + H + +G G+GKTT I +L+ +L
Sbjct: 937 QITALKKCHAAEHYSLILGMPGTGKTTTISSLIRSL 972
>SPBC1718.02 |hop1||linear element associated protein
Hop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 365 KLSRW-YQTS*PSKLFSTKWKKYHPSNRWLQHPSVQTFAEQ 246
K +W Y T+ ++ S +KY +RW+ H + Q + ++
Sbjct: 447 KKRKWIYFTNKSPEMVSYLREKYFTPSRWISHLNFQNYRQE 487
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 361 YPGGIRLLDLQSSSPQSGKNTIRPIV 284
+P GIRL+D + S SG N P+V
Sbjct: 233 FPHGIRLIDSANPSSNSG-NVYSPVV 257
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 393 IQTASTGPSKTIQVVSDFLTFKAL 322
++TAST +K + SD L+FK L
Sbjct: 269 LETASTVGTKLLNASSDILSFKGL 292
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 361 YPGGIRLLDLQSSSPQSGKNTIRPIV 284
+P GIRL+D + S SG N P+V
Sbjct: 233 FPHGIRLIDSANPSSNSG-NVYSPVV 257
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 128 LMTMGPTGSGKTTCIHTLMA 187
+M G +G+GKTT +TL A
Sbjct: 33 IMLCGASGTGKTTFFNTLFA 52
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 131 MTMGPTGSGKT-TCIHTLMAALTEVGRPH 214
+ GP G+GKT T I + A L ++ R H
Sbjct: 1149 LIQGPPGTGKTKTIIGIISALLVDLSRYH 1177
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -2
Query: 364 NYPGGIRLLDLQSSSPQSGKNTIRPIVGCNIQASKHLR 251
+YP L S + I P GCN + S HLR
Sbjct: 192 SYPVSTTTLQTVSGTQSGLVEVITPSCGCNPENSFHLR 229
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -3
Query: 456 IRSPLAKVKVLLSSNTEFKFSIQTASTGPSKTIQVVSDFLTFKALLHKVEKIPSVQSLVA 277
++ P+ VL + KFS Q TG + ++SD + K EKI ++ A
Sbjct: 645 VKEPIYLDIVLSDIAEDGKFSFQIIGTGIQQLETLMSDLGSLKKSFKPSEKINVGMNVAA 704
Query: 276 TSKRPN 259
S N
Sbjct: 705 ISALDN 710
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 302 IFSTLWRRALKVKKSDTTWIVLDGPVDAVWI 394
+F +W L + + W+VL VDA+ I
Sbjct: 174 VFMVIWDYDLSIAATVVEWVVLFSNVDALCI 204
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 25 TRHRTSDRSYRSGQSS*VEFEDHS 96
T H SD + SS VEF DHS
Sbjct: 258 TEHVGSDCEFTRKSSSSVEFSDHS 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,672
Number of Sequences: 5004
Number of extensions: 53581
Number of successful extensions: 238
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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